barSeed - Barley Seed Development Database

Probe CUST_34117_PI390587928

Source Contig U35_14525

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34117_PI390587928	Hv_44K_v2	GCTACAACTTTGAATGTGCTTGTGATGATTTTGACGCTAAATTGTGTGGAGTATTTTCAA	1498	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.326	1.424	1.091	0.854	0.331	0.320
Raw	931.892	1534.047	1046.296	1274.049	179.694	184.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25722.2	1359	4e-23	1274 - 1330	100	57 / 57	plus
JLOC1	JLOC1_25722.1	1375	4e-23	1290 - 1346	100	57 / 57	plus
Harvest21	ABC07746	304	3e-25	230 - 289	100	60 / 60	plus	ABC07746
Harvest35	U35_14525	1573	3e-25	1499 - 1558	100	60 / 60	plus

Contig Sequence (1573 bp)

>U35_14525 1573 Hv_44K_v2
CTTTCTCTCTCCTACCGCCGCGCGTGTGCCCCTCCTTTCTGTCTCCCTCTCTCTCTCCTC
CGCGGGCGCTCCCTCACTCTCCTCCCATCCGTCTAATGGAGGCTCTCGCGGGCGCCGCCG
CCGCCGCCTCGTCCGCGCTCCTCCCGTCCTTCCCCGCCCACCAGTCTCACTCCCGCGTAG
CGCTCCGCGCCCGCCCCTGCGGGCCCCTCCGCGCGGCTTCCGCCGGCGGCGGCGGAGGCA
AGGACGACGCCGCCAAGCCGAACGGGACCCCCGTCGTCAAGTCGAAGGTTGATCCAAGTC
AAAATGGAGCTCTTGGTCCGGTCACAACTGAGAAGTCACGCACGACCTCATCAACCAATA
CGACTCCTGACTCAAGTGGATCCAGAGCTGGCTTGTTCAGAACCCCTATATCAGGTGGTG
TGCAGAGCGCGACTTTTGCCCATGGTTTACCTCCACCGGCTTTGGCTGTTCGCAATTTAA
TGGAACAGGCGCGATTTGCTCATCTATGCACTGTCATGTCTGGCATGCATCATCGACGTG
CTGGATATCCATTTGGTTCACTTGTTGACTTTGCTAATGACTCAATGGGCCACCCTATAT
TTTCTCTGTCTCCCTTAGCAATCCACACTAGGAACTTGCTCTCTGATCCAAGATGCACAC
TTGTTGTCCAGGTACCTGGATGGAGTGGATTGTCTAATGCCCGTGTCACGATATTTGGTG
ATGTCTACCCTTTGCCAGCTGAACAACAGGAATGGGCTCATAAGCAATACGTTGCAAAAC
ATCAACAATGGGCGTCTCAACAGTGGGGAAATTTTTACTACTACAGGATGCAGAATATCA
GTGACATATATTTTATTGGAGGCTTTGGCACTGTTGCATGGGTAGATGTGAAACAGTATG
AAACTATTCAACCTGACAAGATAGCAGTTGATGGGGGCGAACAAAGCTTAAAGGAGTTGA
ACGCGATTTTCTCTAAACCACTTAGAGAGTTCATGTCTGCTGAAGGGGAGGTTGATGATG
CTGCTCTTATATCCGTAGACAGCAAAGGGATAGACATTCGAGTTCGCCAGGGTGCACAGT
TCAACATCCAGAGACTTGCATTTGACGTACCATACAAGGTGGAGACTCTAGAGGAGGCCA
AGAGAGCACTCCATAAGATAATCAAGACAAGCAGCAAATAAAGCGAAGGTCGCACACGCC
CTGCACTTGGTTTCACCAGCCCTACAAGCCCGCTTTGTGAGTCGACAAAAATAACGAAGG
ATCATGTAATTTAGCGTACACAGATGCAAAATAAGATGATTTCTCTTTAATAATGAGAAG
CTCTCTGGCAAGCCCCCATATAGTGTGTACCCATTTGCTTGTATCGCTTGAAATGTAGTG
AAGCTATGTTGTGCAGCCTGGTGCTTATGGAAGCCGGATGCTTTTGTTGGACAAGTTAGT
TGTTGGATTCTGTGTCCCGGCATAGTTATTTTCACTGAAGCATTAGCATCTGGACTCAGC
TACAACTTTGAATGTGCTTGTGATGATTTTGACGCTAAATTGTGTGGAGTATTTTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_14525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40570.1	372	0.0	protein\|pyridoxamine 5-phosphate oxidase family protein, putative, expressed
Brachypodium v1_2	Bradi3g40620.1	367	0.0
Arabidopsis v10	AT1G51560.1	392	7e-155	Pyridoxamine 5-phosphate oxidase family protein \| chr1:19119900-19121859 REVERSE LENGTH=392