barSeed - Barley Seed Development Database

Probe CUST_34112_PI390587928

Source Contig U35_26500

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34112_PI390587928	Hv_44K_v2	TTCTCCCCCTATTTTTCAGGCACGTAGACTAAGGGCATATACAATGAGGTCTTGAAAAAA	558	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.626	1.864	4.072	2.400	0.753	0.823
Raw	188.513	917.224	1694.227	1541.373	173.257	207.090

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55931.2	3985	9e-22	52 - 106	100	55 / 55	minus	None
MLOC	MLOC_55931.1	2750	9e-22	68 - 122	100	55 / 55	minus	None
JLOC1	JLOC1_36119.1	2422	5e-22	2298 - 2352	100	55 / 55	plus
Harvest35	U35_26500	629	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_26500 629 Hv_44K_v2
CCCCGGTCGCGACGACTCCATCGAGCACCTCCCGAGGTGGGTGCAGTCGGTGGTGCGCGA
GGAGTGGACCTCGGAGGTGTTCGACGTCGACCTGCAGAGGCACCCCAACACCGAGAACGA
GATGGTGCAGCTGCTCCAGGTCGGCATGGCGTGCGTCGCCGTTCATCCGGACCAGCGGCC
GAGGATGGAGGAGGTGGTCGCGAGGATCGAGGAGGTCCGGAGCTCCGGCTCCGGGACGAC
GACGAGGACCTCCCCCGAGGACAAGCCCAGGGAGGAGCACATCCGGATCACCTGACCTGA
CTCCTGAGGCGGCAAAAAGTTGGTCTGATGCAGATAAGTAACGACGTGCCAAGCTCTCGA
TCGTTGTAGGTGGTAGTGCCGTTGAGCTCCTTAATTACTTGCGCACAACGACTATGATAC
TATTCAATTCGATTGCCCGCGTGTTAGTGATTAATCCAGTTTGCATGCTACATTGCTGCT
AGGTAGCAAGTCGTCCTTGTTGAACGATATGTGTGCCGTGTGCGTGCATGTATATCTTTG
ATTGATTCCGTTGTAACCTTCTCCCCCTATTTTTCAGGCACGTAGACTAAGGGCATATAC
AATGAGGTCTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_26500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None