barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34111_PI390587928Hv_44K_v2ACCACATGTTATTCAATTTACCGTTTTTGAAGTTGCTCGTGTTCACCGGATTATTGTATC600GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0042.4671.5541.3260.3150.259
Raw 24.70799.64451.64469.8774.2723.403



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36639723252e-242188 - 224710060 / 60plus None
Harvest21ABC518394743e-25371 - 43010060 / 60plus
Harvest35U35_265017213e-25601 - 66010060 / 60plus



Contig Sequence (721 bp)

>U35_26501 721 Hv_44K_v2
AATTTGTTGTGCAGCTACGTGCTGTGGGGGAACTGTGCCTTTGGTCCACTGGTCTGAGCT
GGGAGAGCATTCGCGACGGGCTTAGCACGGTGAAGGGACTGAAATATCTCAAGCTTGTTG
AAGATAACCTCGGGCGTATCGAGATACTGCCTGATCACCTCATAAGCATTGAGCGGATAT
GCGTCCAGTGCAAGCTAACCATGGAATTGGCAATCATAGCTCACCTGCTGCCTAAACTTG
TGTCACTACATATCCTATGTCAAGATCTGCATGTTATTCATGGACCTGCTGGCATCGACA
TCACACGGATGGACCAACTCAAGGAAGTCGCGCTCCATCCACAAGTCAACCAAACAATAA
TAGCTAAACTGCAACAAGCTGCAAGAGGCCATCGCAATACGCCAGTCATTCTGCTAATTG
AAAGCCCTCATTAACGCAGACTTAATCGAACACTTGCAAATCAACAATGGAGTCACTTTC
TGCTTTGCTTCCTAGATCTGCGCAGCAACTTAAGCAGAGCAACCGATGCCCAGAGCCAGG
GGCTTCCCCCATTTCCTTCTTCAAGTTGTTTGTGCTGTCATTTTTATTGTAATAAGGTTT
ACCACATGTTATTCAATTTACCGTTTTTGAAGTTGCTCGTGTTCACCGGATTATTGTATC
ATTTAAATATTTCAGATATCAAGACAAACCGATTCTCTTTTTGTAAAAAAAAAAAAAAAA
A



Homology of Contig U35_26501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None