barSeed - Barley Seed Development Database

Probe CUST_34106_PI390587928

Source Contig U35_26507

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34106_PI390587928	Hv_44K_v2	TAACATCAGAGCAGGGTGTTTTTTCTTACTACTCATACCTTGGTCTGATCACGAGTGAAC	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57995.1	4394	2e-24	1476 - 1535	100	60 / 60	minus	ABC24757
Harvest35	U35_26507	1029	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (1029 bp)

>U35_26507 1029 Hv_44K_v2
GGTTTTGTTTGAGCTGATATGGAGGGACTACTTCAGATTCCTTTCAGAAAAATATGGCAA
CTCCATTTTCCACTTAGGGGGTCCGAGAAAAGTGGCGTCCAAGTGGAGCCAAGATCAGGC
GTTGTTCGAATCTTGGAAAGATGGCCGGACCGGGTACCCTCTTATTGATGCCAACATGAA
GGAGCTCTTAGCTACTGGTTTCATGTCCAACCGTGGCCGGCAGATTGTCTGCTCTTTTTT
GGTCCGGGACATGGGTATCGATTGGCGAATGGGAGCTGAATGGTTTGAAACATGCCTACT
GGATTACGACCCGGCTTCTAACTATGGCAATTGGACATATGGAGCAGGAGTTGGCAATGA
TCCACGAGAAGACCGATACTTTAGCATCCCCAAGCAAGTAAGCATCAAGACTAAATAACG
GCAACATCCGAATAATTGTTTTTACCAGACTGAACTCCAGTCAATCATACTACCATAAAC
CACCATAGGAAACATATTGGCAAGTGCACATGGTGACCTAAGAACAAACATGAAATTGTA
GGTTTTACGCATCAATGAATTGCCCACTAACCCTAAGATGTTAACATCAGAGCAGGGTGT
TTTTTCTTACTACTCATACCTTGGTCTGATCACGAGTGAACATTCCTCTGTAGGCCAAGA
CATATGATCCTGACGGTGAATATGTTGCATACTGGTTACCGGAGCTCCGGTCACTCGCAA
AGGAAAGGAGGAACTTCCCAGGGGCCTCATACATCAAGCAGGTCGTCCCACTGAAGTTTG
ATGGTGGGCATCAGAGAAAAGATCAGCAATTCAACAGGCAGACAAGGCCAAAGAACATTT
ACAGAAGACAAAAGTAATACAGTGTATGCGTTGATAATGTATGCCATCGATCAAGAGTCA
ATAGGAGATAGAGCAAATGTTACAGCAGCTGGTTAGAAAGCAAATGAGAGATGAAGTTCT
GTAAAGTTTCTGTGAAATGTACTATGTATCAGTGACAAGGTGAGATCAGAAGTCTAAAAA
AAAAAAAAA

Homology of Contig U35_26507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45100.1	583	3e-87	protein\|FAD binding domain of DNA photolyase domain containing protein, expressed
Brachypodium v1_2	Bradi1g31670.1	588	5e-86
Arabidopsis v10	AT5G24850.1	526	1e-81	\| Symbols: CRY3 \| cryptochrome 3 \| chr5:8535399-8538016 REVERSE LENGTH=526