barSeed - Barley Seed Development Database

Probe CUST_340_PI415269222

Source Contig TA41871_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_340_PI415269222	Hv_44K_v2	ACAACCACACGGACATGCCAAACTTCGCGCGGCTGGTGAACTCGGCGGACGTGATGATGG	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70646.2	3826	2e-24	2524 - 2583	100	60 / 60	plus	ABC04687 ABC12043
MLOC	MLOC_70646.1	3772	2e-24	2660 - 2719	100	60 / 60	plus	ABC04687 ABC12043
JLOC1	JLOC1_46891.1	3550	8e-25	2295 - 2354	100	60 / 60	plus
Harvest21	ABC12043	1188	3e-25	444 - 503	100	60 / 60	plus	ABC12043
Harvest35	U35_4980	1257	3e-25	513 - 572	100	60 / 60	plus

Contig Sequence (722 bp)

>TA41871_4513 722 Hv_44K_v2
CAGGAACCACTCCGTCCCGGCCTTCCTCTTCTCCAGCGGCGGGTTCGCGGGCAACCTGTA
CCACGACTACACGGACGTGCTCGTCCCGCTCTTCACCAGCACCCACCACTTCGGCGGCGA
GGTGCAGTTCCTGCTCACCGACATCAAGGACTGGTGGCTCGACAAGTTCACGCCGCTCTT
CCGCCAGCTCTCCAACTACGACGTCATCGACGTCGACAACGACCAGGAGGTGCACTGCTT
CCCGCGCATCGTCATCGGCTCCACCTTCCACCGCCCCATGGGCATCGACGGCACCCGCTC
CCCGGGCGGCGAGACCGTGGCCGACTTCAAGCGCCTGCTCCGCCGCGCCTTCCGGCTCGA
CCGCGTGGTGGCATCCCACGACGGGTCGGCCAGCCTCGGCAAGCCGCGGCTCCTCATCAT
CTCCCGCAAGTCGTCCCGCCGGTTCCTCAACGAGCGCGCCATGGCGCACGCCGCCGCGCT
GGCGCAGTTCGACGTGCGCATCGCGGAGCCGGACAACCACACGGACATGCCAAACTTCGC
GCGGCTGGTGAACTCGGCGGACGTGATGATGGGGGTGCACGGCGCCGGGCTGACCAACAT
GGTGTTCCTCCCGACCGGGCCGTGCTGCTGCAGGTGGTGCCGTTCGGAGGGCCTGGGAGN
GGGCTTGTCCCGGGGTGACCTTTCAAGGGACCCCGGGCCCAAAGGAACTTTCNGAACGGT
GG

Homology of Contig TA41871_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49320.1	461	1e-117	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g34670.1	456	3e-115
Arabidopsis v10	None