barSeed - Barley Seed Development Database

Probe CUST_34080_PI390587928

Source Contig U35_26519

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34080_PI390587928	Hv_44K_v2	GGTTATCTGCATGATGTAAACTCTGGAATTTCATGTATCTTCTCTCTGTTTCTGAATGAA	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76283.1	1107	2e-24	37 - 96	100	60 / 60	minus	ABC24015
MLOC	MLOC_76282.1	922	2e-24	37 - 96	100	60 / 60	minus	ABC24015
MLOC	MLOC_55485.1	405	7e-23	225 - 284	98	59 / 60	minus	ABC24015
JLOC1	JLOC1_50874.1	1020	8e-25	841 - 900	100	60 / 60	plus
Harvest21	ABC24015	554	3e-25	462 - 521	100	60 / 60	plus	ABC24015
Harvest35	U35_26519	554	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_26519 554 Hv_44K_v2
CTACCCTCCCCATCCCCTCGAGCTCCAGACCTCGACGCCATGGTGACTGCCTTTGACACA
CGCGCCCCTTCGTCACCATCTCTGATGGATCCTCCTCCGGTGCAGACAACGTCCATGTCT
TCAGGGGCGGTGGCAACGACTTCCTGGCCTCCCCCGACCCCTACGCCTTTCGCCACGACC
CCACCGCCGCGCACCCCTTCGGCATGCCCGACTCCAACGGTGACAGCGCCATGATGAGGG
CCTCTTCACCGACTCCGGTCACGTCCTCGTCGACACCGTCCATATGGGGTCTTGCGAGGG
CTTCCTCCACCTCGAGTGGCGTCGATGACTACAGAAAGTACGAGGATATTTTGCCTAACT
TCAAGACGAGTGTTCTCCCTCTTATAGAAGTGAAGCGAGGCTGAAGATATTCAAAGAAGG
GATAACATATTTTTGTATAAAAAGTTACGTATTGATAGCTGGGTTATCTGCATGATGTAA
ACTCTGGAATTTCATGTATCTTCTCTCTGTTTCTGAATGAAATATTGTCTATTTTTGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_26519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None