barSeed - Barley Seed Development Database

Probe CUST_34074_PI390587928

Source Contig U35_18469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34074_PI390587928	Hv_44K_v2	AGTTAAAAACTGGCATTGCACCTGCCACGCTTGCTATTTCAGATGAACTGAAGAATGAGG	1306	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374878	2106	2e-24	1378 - 1437	100	60 / 60	plus	ABC08920 ABC18299
MLOC	MLOC_73620.1	1920	2e-24	1355 - 1414	100	60 / 60	plus	ABC08920 ABC18299
MLOC	MLOC_73620.3	1923	2e-24	1438 - 1497	100	60 / 60	plus	ABC08920 ABC18299
MLOC	MLOC_73620.2	2100	2e-24	1354 - 1413	100	60 / 60	plus	ABC08920 ABC18299
JLOC1	JLOC1_49017.1	2216	8e-25	1354 - 1413	100	60 / 60	plus
Harvest21	ABC08920	1366	3e-25	1307 - 1366	100	60 / 60	plus	ABC08920
Harvest35	U35_18469	1366	3e-25	1307 - 1366	100	60 / 60	plus

Contig Sequence (1366 bp)

>U35_18469 1366 Hv_44K_v2
CCACACTCCAATCAACCAAATTCGCTCCCGTCCACCACGGCAATGGCCATGGACTTGGAT
GAGCCGCTTGCCGCGGAGAAGGGCGAGGTGGCGCTGCAGCAGCTGCGGCGCGCCGACCCG
TCCGTCTACCTCTCCCCGTCCGCCGATCTCGCCGCCGCCGCCCGGGCGGCTCTGAAGCAC
TTCCACTCGTCGCTCGCCGTTGTCTCCCCCGTGCAGCCGCCGCCGCTCCCCAACCTCCTC
GCCGGCCCCAACTTCGACGCCGAGCAGATTTGGTCCCAGAGCGAGCTGCTCTCCCGCCCC
CTCCTCCCCCACCTCCACCGCCAGCTCCGCCGCCTCGAGCACCAACCGCTTGCGCAGCCG
TCGGCTGCTCCTCCGCCGTCCAAGCCCGCTAAAGCCGAGGTTGACCCGTCAGACGAGGAG
GAGGATGGAGAGGGCGATGAATCGGAAGAGGAGAATGAGGATGGCCTGGAGGGCATGGAT
GACGAGTTGGAATCGGGGGAGGGGGAGGAGGAAGAAACGGAGGAGCTAGGGGCGAAGGCA
GGGAACGGGTTGGAGGACAGGTTCCTGAAGATGGATGAGCTGGAAGAGTTTATGGAGGAG
GGGGAGGAGCAAGAGTACGGTGGGGGTTCCAAGCGAGGAGAGAAGAAGAAGGCAAGTGTG
AACTTGATGGAGGACGATAGTGATGAGGAGGATGATGGTGGTGATGATGAAGATGATGAC
GATTTGGATTATGAAGATTTTGAGTCTGATGATGAAGAGGGTGCAGGGAAATCCGGCGGA
GATCTAAAGTACGATGATTTTTTTAAGGAAAGCCGTAAGCAACAAGTCAAGAAGAGTAAT
GGTTCCACAAAGAAAGTCCACTTCAAGGATGAATTGCATGAAATGGAAGTGGATGACATT
GAGAAGGATGATGTAAATGATGGTCCAGCGTTAGAGGATGAACAAGGTCTTTCAACTCAT
GAAAAGGAGCTCTTGAAGATACGTAGCCAAATAGATCTAATGGAGAAAGCTAGTCTTGAA
CCCAGTAAATGGATCATGAACGGAGAGGTTAGTGCTTCCAGCAGGCCCAGAAATAGTGCC
CTGGAAGTGGATCTTGATTTTGAGCATAATGTAAGACCTGCTCCAGTAATCACGGAGGAA
GTCACAGCTTCTCTCGAGGAGATGATAAAGAAAAGGATTGCGGAGGGTCATTTTGATGAT
GTTGAAAAGCCTTCAACCTTGCTGTATAAAGCTCCAAGGGAGCAAAAGGAGATGGATGAA
AACAAGAGCAAGAAGGGTCTTGCTGAACATTATGAGGATGAGTTTAAGTTAAAAACTGGC
ATTGCACCTGCCACGCTTGCTATTTCAGATGAACTGAAGAATGAGG

Homology of Contig U35_18469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04200.1	532	3e-81	protein\|M phase phosphoprotein 10, putative, expressed
Brachypodium v1_2	Bradi4g43500.1	564	2e-104
Arabidopsis v10	None