barSeed - Barley Seed Development Database

Probe CUST_34065_PI390587928

Source Contig U35_20782

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34065_PI390587928	Hv_44K_v2	TTAATTCCGTTACCAATGCGCTCTGGGTAGGGCATGAGAGGCACTGGCGGCGGCTTGCCG	283	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.589	1.283	0.884	0.457	1.061	0.848
Raw	1320.887	1342.813	969.437	560.241	603.452	553.030

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370348	1990	2e-24	205 - 264	100	60 / 60	plus	ABC17852 ABC49945
MLOC	MLOC_10214.1	3356	2e-24	211 - 270	100	60 / 60	plus	ABC17852 ABC49945
JLOC1	JLOC1_6665.1	1809	8e-25	213 - 272	100	60 / 60	plus
Harvest21	ABC18177	615	3e-25	186 - 245	100	60 / 60	plus
Harvest35	U35_20782	713	3e-25	284 - 343	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_20782 713 Hv_44K_v2
TCGAGCACTGTTGGCCTTCACCTCCCTTCTCCCTCCCTCATAAAATCGGGAGACCTTTCC
CTCCCTCCCTCCCTCCCTCCCTCCATCGTCTCGTCCTACTCACACTCCACCTCCCCTCTC
TCCCTCCCTCGCCGCGCCGTGCTCCCTCCACTCCACTCCACTCCCCTCCGCTCCGCTCCG
CTCCATCGCCCCAGGGCGCACACGGGATCGGGCGCAGATCTGCGCCCCACCTCCCCACGC
GCTCGCTTCCCACTCCCCGCCTCCCCGCGCCAGGCGGCCTGGCTTAATTCCGTTACCAAT
GCGCTCTGGGTAGGGCATGAGAGGCACTGGCGGCGGCTTGCCGGCGGACCAATTCACATC
GGGATGGACCTCAGCGTCGCCGCCGCCGTCGAGCTCGGCAAGCGGGGCCGCACCGAGGAC
CAGGACCAGGACCAGGGCCACGGGGACGCCAAGCGGCTGGCGCTCGTGCCGTGGCCGCCG
CACCAGCAGCACCCCTCCTCGCGGATCTACCGCGTCTCGCGCGGCTCCGGCGGCAAGGAC
CGCCACAGCAAGGTCTACACGGCCAAGGGCATCCGCGACCGCCGCGTCCGCCTCTCCGTC
GCCACCGCCATCCAGTTCTACGACCTGCAGGATCGCCTTGGCTACGACCAGCCCAGCAAG
GCCGTCGAGTGGCTCATCAAGGCAGCCGCCGCCGCAATCGACAAGCTCCCAGA

Homology of Contig U35_20782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None