barSeed - Barley Seed Development Database

Probe CUST_34061_PI390587928

Source Contig U35_20786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34061_PI390587928	Hv_44K_v2	TTGTAAGATGGCTGTAAGAGTGTAAGTTATGGATATATACAAGAAAGACGTACGACATGA	815	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.091	2.437	1.272	0.797	0.267	0.287
Raw	664.415	1203.661	546.396	545.316	64.635	73.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63428.1	1226	2e-24	1141 - 1200	100	60 / 60	plus	ABC16308 ABC24817
JLOC1	JLOC1_41544.4	1091	8e-25	920 - 979	100	60 / 60	plus
JLOC1	JLOC1_41544.3	1189	8e-25	1018 - 1077	100	60 / 60	plus
JLOC1	JLOC1_41544.2	1390	8e-25	1219 - 1278	100	60 / 60	plus
JLOC1	JLOC1_41544.1	1787	8e-25	1616 - 1675	100	60 / 60	plus
Harvest21	ABC24817	911	3e-25	816 - 875	100	60 / 60	plus	ABC24817
Harvest35	U35_20786	914	3e-25	816 - 875	100	60 / 60	plus

Contig Sequence (914 bp)

>U35_20786 914 Hv_44K_v2
GGAACAGAAGGTTACAGAGGATGCCCGCATCTTCGCTGAGCAAGATGCAGCTGCTCAGAA
ATATGCTTCACATGTCCTTCAGGAAAAGTATGATGAAGCTATGGCTTCACTCACGCAAAT
GGAGAGCAGAGCAGTCATGGCAGAAACAATGTTGGAGGCAACACTTCAATACCAATCTAG
CCAGCAGAAAGCACAACTGCCATCGCCATCTCCTTCTCCAAGGACACCAACGCGAGATGC
ATCTCCCGGCCAAGTGAACCAAGATTCATCACAGGAGTTTCAGCCTAGAAAAATAAGTTT
GCTTGCCCCATTTTCGCTCAGTTGGCGTGACAAGAACAAGGGCAAACAAGATGAGTCAAC
AAACAGCAAGCTTAATAACAACACTGAGCAAAGTGTTGAGACACCGAAGACAGACCATGG
AAATCAGGAGGCCACGCCAAAAGAGGGTGAACAGCGAGTGGAGACACCCAACAAGGATGA
ACCCAGATTGGACACGACCAAGATGGACGGCGATCTGCCAACTGTCAAAACGACCACGGA
TAAAATGAACGGGCAGGGAGAGCATTTAGAAGAAATAAAACTGGATTGATCCGTTGGCCG
ATCACATCTGGTGGTAGATAGTGCCTTCTGATTTTGATAGGAAGCTGAAGTCACGACATT
CGGCTCCAATTTTTAAATCGTGTATTGTTGTAGTCCCCTCCCTCTCCCGTCCCCGTCCCC
GTGTCCAGCTTGTGTCACTTCGTTTAGGTTCATAGATTCAACCTTTCCAATCATATACCT
TGCCAAAAGATAATAAGTTATGTTTTACTTGTTCATTGTAAGATGGCTGTAAGAGTGTAA
GTTATGGATATATACAAGAAAGACGTACGACATGAATGAGAAATGCAATTTTTGTAAAAA
AAAAAAAAAAAAAA

Homology of Contig U35_20786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61860.2	722	3e-76	protein\|TBC domain containing protein, expressed
Brachypodium v1_2	Bradi2g54230.1	842	8e-93
Arabidopsis v10	None