barSeed - Barley Seed Development Database

Probe CUST_34059_PI390587928

Source Contig U35_20788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34059_PI390587928	Hv_44K_v2	GGCAGTTCATCTCCGGCATAGTTAAAAACTTGGGTTTTTATCATTTATCTCACGACTCAG	1709	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.696	1.690	1.152	0.846	0.405	0.518
Raw	1176.587	1841.468	1088.343	1267.258	209.282	293.442

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41198.3	2534	4e-23	2397 - 2456	98	59 / 60	plus
JLOC1	JLOC1_41198.2	1872	4e-23	1735 - 1794	98	59 / 60	plus
JLOC1	JLOC1_41198.1	1857	4e-23	1720 - 1779	98	59 / 60	plus
Harvest21	ABC13326	1131	3e-25	1072 - 1131	100	60 / 60	plus	ABC13326
Harvest35	U35_20788	1769	3e-25	1710 - 1769	100	60 / 60	plus

Contig Sequence (1769 bp)

>U35_20788 1769 Hv_44K_v2
CGCCCACCCCCTACCGCGCGCCTCGCAGCTCCTCGACGCCGACACCCAGCAGCAGCCGCC
GACGAGGACTTCTCCGCCTCCGCCGCCCCCTCTTCGCGTCTGTCTCGTGGAAGCCTTATT
GCTGATTTGTTCTCAGCATGGGCAAGTCCAAAGACAAGAAGGCTTCGCGGGAAGCCAAGG
TCGATAAGAAGCTGGCGCTTGGGCTTGGAGTGAAGAGGAAGCAGCTGAAGAAGAAGAAGG
ACAGAGTTTTAGATGCTGCGGTTGAGAGCGAGGGCGCTGCCGGACATGCTATCGTGGAAG
ACAAAGGAAGCAAGAAAACTGTATTGATGAAGCAAAAGAAGAAAACTAAGCATGCCAAAG
TAATAAGCAGTCGTTCCAAGGCGGATAATTTGGTGACTCTCAATGAGGATGAGGCAACGC
CTAAGCTGAAGAAGAAGAACAAAAAGCAGTTAAAGGAAAGCAAAAGTCCTATCGAGGTAC
AAAGTCCGTTGGATAGTAATGATGCTGGAACAATGAAGCTGAAGAAGAAGAAAAAGAAGG
CGAAGGAAGGGAAGAGCTCTGTTGAGCCCAATGATGCAGATGCTATCCTTCATGAAAACC
TAGATAAAGAAACTTTAAACACTGACGTCAACCAACTTGCGGCAGGGAGTGAAGTTAGGG
ATATTGGGGAACCAGAAAAGGCAAAGAAACGAAAGAAAAATAAGACAAAGAAAGTAAAGC
AATCTGGGGAAGTCAACAAGATAGATACGCAGGTATCAGTTAGAGAGGACAATTTGGAGA
TGCATGAAGTTGACACCGCAAATGTTGATGAGATTGCATCAGTTGATGAAGACTGTTCCA
GAGGAATGCAAAAATGGATCTTGGAGTACAGACAGAAGCGGCCAGGCTTGAAAGTCTTGC
AGCAAAATATAGATGTGTTTATAACTGCACATGAGGAACAACAAGAGCAGGAGAAGAAGG
AAAGAGAGGCAGCAGCTGCAGAAGATGGGTGGACAGTGGTGATGCATCATAAAGGTAGGA
AGAAGACTACAGATGCTGAAACTGGAACAGCGGTTGGCTCTGTATCTCTGGCTGCAATGC
AAGAGAAAATGGCTAAGAAGAAACCCAAGGAAGTTGGTCGGAACTTCTACAGACATCAGA
AACGAGAAGCTCAAATGAGTGAGCTGGCGATGCTGCAGAGCAAGTTCGAGCAGGACAAGA
AGAGGATACAGCAGCTGCGGGCGCAAAGGAAATTCAAGCCTTACGGATTCTGAAGGGGTT
CCTCCACAGAAACGCAGCGTTCGTTCGACATTACTCGAGAGCGGCCAGCAGCTGGCGCCG
AAAGGCTTTGCTTGGTTGCACTGTATTCCTTTTTTGACAGGAAATGTTGCATTGTTGGAC
AAATGTACTATGCTTCTTGACTGGGAATGGTGCCAGTCGTGTACAATGGCGTGAACATTT
GCAGCATTTCCTGTCAAATTTTTGTGTACCAATTCATGTGCGGTTCTTTGCCGCCTTGTA
GAGGCGCCGAGGAAGTGAAGGTGGTCGGTGAGACAGACGCTTAGGTTCCTGGGGATCATG
ATACCTCGGCAGTCGGCGCCCGTGCCGTGTCTCTTGTGCTTTAGGAGCAACTCTAGCAGA
TCTCTTGTGCTTTAGAAGCAACTCTAGCCGATGTGCTAATTTCCCTACCTACAAAATCGT
TTTATGGTTGGCTCTAAAATGATTTTGCTGGCAGTTCATCTCCGGCATAGTTAAAAACTT
GGGTTTTTATCATTTATCTCACGACTCAG

Homology of Contig U35_20788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49620.1	367	8e-106	protein\|expressed protein
Brachypodium v1_2	Bradi3g56230.1	373	7e-119
Arabidopsis v10	None