barSeed - Barley Seed Development Database

Probe CUST_34052_PI390587928

Source Contig U35_18472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34052_PI390587928	Hv_44K_v2	ATGCTGGTCATGATCACGTGGAGGATATCATTGGGTTGGTCTTCAAATACCTGCACCTAT	1019	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.303	1.621	1.263	0.511	0.524	0.335
Raw	42.196	40.294	32.234	18.521	6.181	3.746

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365532	3066	7e-23	1025 - 1084	98	59 / 60	plus	None
MLOC	MLOC_64438.7	1051	7e-23	762 - 821	98	59 / 60	plus	None
MLOC	MLOC_64438.4	1728	7e-23	1439 - 1498	98	59 / 60	plus	None
MLOC	MLOC_64438.5	2367	7e-23	2078 - 2137	98	59 / 60	plus	None
MLOC	MLOC_64438.1	2254	7e-23	1773 - 1832	98	59 / 60	plus	None
MLOC	MLOC_64438.2	2263	7e-23	1782 - 1841	98	59 / 60	plus	None
MLOC	MLOC_64438.6	1827	7e-23	1346 - 1405	98	59 / 60	plus	None
MLOC	MLOC_64438.3	2357	7e-23	2049 - 2108	98	59 / 60	plus	None
JLOC1	JLOC1_42313.4	2504	4e-23	2012 - 2071	98	59 / 60	plus
JLOC1	JLOC1_42313.3	1797	4e-23	1305 - 1364	98	59 / 60	plus
JLOC1	JLOC1_42313.2	1773	4e-23	1281 - 1340	98	59 / 60	plus
JLOC1	JLOC1_42313.1	1866	4e-23	1374 - 1433	98	59 / 60	plus
Harvest21	ABC18331	1079	3e-25	1020 - 1079	100	60 / 60	plus
Harvest35	U35_18472	1079	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1079 bp)

>U35_18472 1079 Hv_44K_v2
GACAAAGCATAGAATACTAGCGCCCCCACTAGCCTAAGCCCCGAGCCTCCAATCCACCAC
CGGAGACCGGAGCCAGCGCCTCCAAGCGAGGGTTCAGGGCGAGCGGCGCGCATGGCGGCG
GGCAATGTGGAGTTCGTCCGCGCGCGCAGCGACAAGCGGGAGTACCGCCGCCTGCTGCTC
CCCAACGCGCTCGAGTGCCTCCTCATCAGCGACGCCGACACCGACAAGGCGGCGGCGTGT
ATGGAGGTCGGCGTGGGCTCCTTCAGCGACCCGGAGGGGCTCGAGGGCCTCGCGCACTTC
CTCGAGCATATGCTGTTTTATGCCAGTGAGAAATACCCTGGAGAACAAGATTATACAAAA
TATATCTCTGAGATTTGCCCAGTTCTTCATTAAGCCACTGATGTCGGAGGATGCTGTTCT
TAGAGAGATCAAGGCTGTCGATTCTGAACACAAGAAAAATCTGTTGTCAGATGGCTGGAG
AATGCATCAGCTTGAAAAGCATCTGGCCTCAAAGGATCACCCTTACCATAAATTCAGTAC
GGGAAGTTGGGAAACACTGGAAACTAAACCAAAAGAGAGGGGTTTGGACATCAGACTTGA
GCTTCTCAAGTTTTACGAGAACTACTCAGCAAATCTTATGCATCTGGTTGTTTATGGAAA
GGAGAGCCTCGATTGCATTCAAACCTTGGTTGAAAGCCTGTTTAGTCACGTCAAGAACAC
TGACCAGAGAAGCTTCAAATGTCCAAGTCAGCCCCTTTCAGCAGAACATTTGCAGCTTCT
TGTCAAAGCAATCCCAATAATAGAAGGTGACTACCTAAAAGTATCATGGCCTGTTACACC
TAACAACCAGTTTTACAAAGAAAGTCCTAGCCGTTATCTCAGTCATCTCATTGGGCATGA
AGGCGAGGGATCCATCTTCCATATTATAAAGGAATTAGGATGGGCCATGGATTTGGTGGC
TGGTGAGAGCAGTGACAGCACTGAATACTCTTTTTTCTCAGTAGGCATGAGGCTCACTGA
TGCTGGTCATGATCACGTGGAGGATATCATTGGGTTGGTCTTCAAATACCTGCACCTAT

Homology of Contig U35_18472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57073.1	974	1e-164	protein\|insulin-degrading enzyme, putative, expressed
Brachypodium v1_2	Bradi2g51710.3	968	3e-172
Arabidopsis v10	AT2G41790.1	970	5e-118	Insulinase (Peptidase family M16) family protein \| chr2:17429453-17436110 REVERSE LENGTH=970