barSeed - Barley Seed Development Database

Probe CUST_34051_PI390587928

Source Contig U35_18473

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34051_PI390587928	Hv_44K_v2	ATGCCTTTACATCCTCCGAGACAACAAATTACTATTTTGATGTTAACGCGGACAATTTCG	392	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64438.4	1728	2e-24	648 - 707	100	60 / 60	plus	None
MLOC	MLOC_64438.5	2367	2e-24	1287 - 1346	100	60 / 60	plus	None
MLOC	MLOC_64438.1	2254	2e-24	952 - 1011	100	60 / 60	plus	None
MLOC	MLOC_64438.2	2263	2e-24	1059 - 1118	100	60 / 60	plus	None
MLOC	MLOC_64438.6	1827	2e-24	623 - 682	100	60 / 60	plus	None
MLOC	MLOC_64438.3	2357	2e-24	1326 - 1385	100	60 / 60	plus	None
JLOC1	JLOC1_42313.4	2504	8e-25	1289 - 1348	100	60 / 60	plus
JLOC1	JLOC1_42313.3	1797	8e-25	582 - 641	100	60 / 60	plus
JLOC1	JLOC1_42313.1	1866	8e-25	651 - 710	100	60 / 60	plus
Harvest35	U35_18473	452	3e-25	393 - 452	100	60 / 60	plus

Contig Sequence (452 bp)

>U35_18473 452 Hv_44K_v2
ATAGAATACTAGCGCCCCCACTAGCCTAAGCCCCGAGCCTCCAATCCACCACCGGAGACC
GGAGCCAGCGCCTCCAAGCGAGGGTTCAGGGCGAGCGGCGCGCATGGCGGCGGCGGCGGC
GGCGGGCAATGTGGAGTTCGTCCGCGCGCGCAGCGACAAGCGGGAGTACCGCCGCCTGCT
GCTCCCCAACGCGCTCGAGTGCCTCCTCATCAGCGACGCCGACACCGACAAGGCGGCGGC
GTGTATGGAGGTCGGCGTGGGCTCCTTCAGCGACCCGGAGGGGCTCGAGGGCCTCGCGCA
CTTCCTCGAGCATATGCTGTTTTATGCCAGTGAGAAATACCCTGGAGAACAAGATTATAC
AAAATATATCTCTGAGCATGGTGGTTCTTCCAATGCCTTTACATCCTCCGAGACAACAAA
TTACTATTTTGATGTTAACGCGGACAATTTCG

Homology of Contig U35_18473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57073.1	974	5e-62	protein\|insulin-degrading enzyme, putative, expressed
Brachypodium v1_2	Bradi2g51710.3	968	1e-65
Arabidopsis v10	None