- Probe CUST_3404_PI390587928
- Source Contig U35_11862
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3404_PI390587928 | Hv_44K_v2 | ATCGATTGAGACCGTTCGGTTTGGTTTGTCGATCGATGGAGCGCAAGAGCTCGTTCGGCG | 13 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.284 | 0.837 | 1.115 | 1.441 | 0.774 | 1.190 |
| Raw | 4.372 | 26.761 | 30.311 | 57.488 | 11.468 | 19.931 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364379 | 762 | 2e-24 | 37 - 96 | 100 | 60 / 60 | plus | ABC09116 |
| MLOC | MLOC_22964.1 | 331 | 2e-24 | 55 - 114 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_15893.1 | 317 | 8e-25 | 50 - 109 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC26291 | 356 | 3e-25 | 14 - 73 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11862 | 357 | 3e-25 | 14 - 73 | 100 | 60 / 60 | plus |
Contig Sequence (357 bp)
>U35_11862 357 Hv_44K_v2 CAGCTCTGGCTTGATCGATTGAGACCGTTCGGTTTGGTTTGTCGATCGATGGAGCGCAAG AGCTCGTTCGGCGCGTCGTGGGCGGACCAGTGGGACTACGGCAGCGACCCGGCCCCGCGG GCCGCCGGCGCCGGCGGCAAGAAGCAGGGCGGCGGGGTGGAGAAGACCAAGGCGGCCGCG GCCACGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGGTTCCAGTGGATCAAGGGC AAGGTCCAGAAGAAGAAGCAGGGCGCCGCCGGCGCCGGCGACGACGCGGCTGCCGGGTAT TATGCCACCCTGCCAGCCTCGTTTATTGATCCCTGGCGGATGGATGGATGGATGGAT
Homology of Contig U35_11862 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |