barSeed - Barley Seed Development Database

Probe CUST_34045_PI390587928

Source Contig U35_44740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34045_PI390587928	Hv_44K_v2	TTGACTTGTGAACGAGAAAGCCAAGTGAAGCAACAAGCAGCTGAAGCATTTCGAGAGCAA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5718.1	2402	2e-24	111 - 170	100	60 / 60	plus	ABC14081 ABC15712 ABC21253
MLOC	MLOC_5718.2	1796	2e-24	16 - 75	100	60 / 60	plus	ABC14081 ABC15712 ABC21253
JLOC1	JLOC1_3690.1	1894	8e-25	24 - 83	100	60 / 60	plus
Harvest21	ABC42830	569	3e-25	1 - 60	100	60 / 60	plus
Harvest35	U35_44740	569	3e-25	1 - 60	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_44740 569 Hv_44K_v2
TTGACTTGTGAACGAGAAAGCCAAGTGAAGCAACAAGCAGCTGAAGCATTTCGAGAGCAA
GGCATAGGGCATGGGGTCCTTGGCACCAGTTGAGAGGCCGCACGCCGTGATGATCCCCTA
CCCGGCGCAGGGCCACATCACGCCGATGCTGAAGCTGGCGAAGCTGCTCCACACCAGGGG
CTTCCACATCACCTTCGTCAACACCGAGTTCAACCACCGCCGCCTGATGCGCTCGCAGCC
GCAGGGTGCGGGCACGCTGCATGGCCTGCCTGCGTTCCGGTTCGCTGCCATCGCCGACGG
CCTTCCGCCGTCCGACCGCGAGGCCACACAGGACACCGCTGCGCTGTCCTACTCTACCAT
GACCACCTGCCTCCCGAGACTGAAGGAGCTCATCATCAAGCTCAACGAGGAGGCCGGGAC
CTCCGGCGGCGCGCTGCCGCCTGTGACCTGCTTGGTGGCCGATGGCACCATGTGTTTTGC
TCTTGTCGCCGCGCGGGAGCTCGGCCTCCGGTGCGCCACCTTCTGGGCCCCCAGCGCCTG
TGGTTTCATGGGCTACTGCTACTACAAGG

Homology of Contig U35_44740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31200.1	498	9e-72	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g06377.1	491	5e-77
Arabidopsis v10	AT1G22370.2	479	1e-51	\| Symbols: AtUGT85A5, UGT85A5 \| UDP-glucosyl transferase 85A5 \| chr1:7898116-7899879 REVERSE LENGTH=479