barSeed - Barley Seed Development Database

Probe CUST_34040_PI390587928

Source Contig U35_44743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34040_PI390587928	Hv_44K_v2	CGCTAGATTACCTTGTTTGTTTTTGCTTGCCGCACGACGAAAGGATTCCTGGACTGTTTT	592	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.086	1.574	1.286	1.041	0.520	0.391
Raw	27.856	58.979	45.872	59.927	10.189	8.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57033.1	1344	2e-24	1176 - 1235	100	60 / 60	plus	None
JLOC1	JLOC1_36916.3	1405	8e-25	1258 - 1317	100	60 / 60	plus
JLOC1	JLOC1_36916.2	1335	8e-25	1188 - 1247	100	60 / 60	plus
JLOC1	JLOC1_36916.1	1372	8e-25	1225 - 1284	100	60 / 60	plus
Harvest21	ABC42840	661	3e-25	593 - 652	100	60 / 60	plus
Harvest35	U35_44743	661	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_44743 661 Hv_44K_v2
ATGCAGGTCGCACACAGGTAGTGGCTGGGTCTAAGACAGTTCTTGCAGTAGGCCCAGGGA
GGAAAGCTGACATAGATTCGGTTACTGGGAAATTGCGCTTACTGTAAGCTGCATCTCGGA
CATGAACATTTGGCGTAGCTCGAAGTGTTACCAGGTAGCACGCCGGACACGTCCACCCCT
TTCGAAGACCATGTTTGCGTGCTCGCGGTTGAAGGCTAGATCCCCTTCCTCAATCCTCAT
GTGTTAACCCGGAAGTGATTCTTCTGGTCCATCCCATCCCTGTAGACTGTTGTAGTGCTT
GATTTTTAAAATGCCACCATCCGCAACCCCTTTTTTGTTATACTACCAAATTGATGCCGG
TGCACCACAGCTTTCCCTTTCCTTTTCCTTTTGGCAACACTGATGAGCAACTATTTGTGA
TCTCAAGGTAGGCTATCGTGCATCCCCGTTCCCCAAGTAAAAGTAATGGATTGCTTGCAC
CGTGTGCGCGCCCAAGAGGAAACCTCAAACATGTGTTAATACTTAATACTCGTNCATGGT
GTGCATGGTAGCCCTGTCTTCTCAGACACTCCTGGCACCTCCAGTTACAGCCCGCTAGAT
TACCTTGTTTGTTTTTGCTTGCCGCACGACGAAAGGATTCCTGGACTGTTTTGCGCTGCA
A

Homology of Contig U35_44743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None