barSeed - Barley Seed Development Database

Probe CUST_34037_PI390587928

Source Contig U35_44747

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34037_PI390587928	Hv_44K_v2	TCCTAAAAACCAAGTTTGGCTTCGACGATGCTTTTAACTACAAGAAGGAAGAGGACCTCA	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52865.3	829	2e-24	122 - 181	100	60 / 60	plus	ABC05939 ABC05940
MLOC	MLOC_52865.1	1507	2e-24	922 - 981	100	60 / 60	plus	ABC05939 ABC05940
JLOC1	JLOC1_33903.1	1512	8e-25	922 - 981	100	60 / 60	plus
Harvest21	ABC42848	373	3e-25	294 - 353	100	60 / 60	plus
Harvest35	U35_44747	373	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (373 bp)

>U35_44747 373 Hv_44K_v2
CTTGTCCTCTTGCCAAAGAAATCCTAGCCCTAAAGAAGTTAATCAGTGTAATCAATTCAT
TATGGATTAAAAAGATGGAAAGCATGTAGTCGGGAACATTACTCATACAAGTTCCAAGTG
GAGCCATTTTACCTCCTGAAGTCAGAAATCTAGCATGCAAGTAACAAGTTATCCTCACTT
TCTCTTCTATGGTTTTAATATTATGTGGAGGAATGCAAAAGTCCCATGGTTGACTTTGAA
AGGTAAAAGTATGAGAAATTTGCTTTTGTCTTTATGGTAACCTCAGGTCAATCTCCTAAA
AACCAAGTTTGGCTTCGACGATGCTTTTAACTACAAGAAGGAAGAGGACCTCAACGCCGC
ACTAAAGAGATGC

Homology of Contig U35_44747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None