barSeed - Barley Seed Development Database

Probe CUST_34030_PI390587928

Source Contig U35_20796

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34030_PI390587928	Hv_44K_v2	GAGTACCATAGTTCTGAGAATACCCTTGATCCTGGAAGAACTCTTGCTATGTCAGCTCCA	560	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365690	3470	2e-24	1510 - 1569	100	60 / 60	plus	ABC11445
MLOC	MLOC_13833.1	2475	2e-24	1729 - 1788	100	60 / 60	minus	ABC11445
MLOC	MLOC_13833.2	3412	2e-24	1920 - 1979	100	60 / 60	minus	ABC11445
JLOC1	JLOC1_9405.2	2686	8e-25	689 - 748	100	60 / 60	plus
JLOC1	JLOC1_9405.1	2200	8e-25	689 - 748	100	60 / 60	plus
Harvest21	ABC13761	721	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_20796	721	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (721 bp)

>U35_20796 721 Hv_44K_v2
GCAAAAAGACCCTAGAGATGCCGCGACTGTCTCATTCTGTATTGGGACATGATCCTAGAA
GATTGCCTGATAGAAATGGTTGGTTTGAACGACAATGTTCTTTTGAGGATGGTGCACAAC
GGCCTTCGATGAGCACGCTTGATGAAGAATATAGGAAACAAAGTGCAAGAGAACTTATTG
ATGCCTATGGAAATTCTCAAGGCAATGATGCTGATGAAAGGCTTCCCAAGATGCAACGGC
TAGAATCAAATGGCATGGCAGGTAGATCCAGTGCACAAAAATGGCTCACTTCAGAGGAAG
AAGAGTATACTTGGGAGGATATGCGTCCAACTTTGTCCCGAAATAGAAACAACATTCCGT
CTTTACCTTCCTCTGAAACCTCGAGAGCTGGATTTCCTGGGTCAAACACTGGGCAGCTGG
ATTCTGATGTTGGGGTGCGCAGCTGGCGAAGCCAGGCTCCTCGACCAGCACTAAATCTCG
AAGACAGGACTGGTCATGTTGACATAGCCACTAGTAGGAGACATCCAGGCAATTTTGGTC
TGCACAATGGAGCTATTTCAGAGTACCATAGTTCTGAGAATACCCTTGATCCTGGAAGAA
CTCTTGCTATGTCAGCTCCACCATGGCAGCAGACTAATGGCCTGCCTTTGCGAATGCAAG
CACCTCAACCTTCATCAACACTGAATAGGTTGGCACTGCCCACTGATGTTGAAATGCCTG
T

Homology of Contig U35_20796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08830.1	972	9e-113	protein\|expressed protein
Brachypodium v1_2	Bradi3g15320.1	937	3e-125
Arabidopsis v10	None