- Probe CUST_3402_PI390587928
- Source Contig U35_11864
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3402_PI390587928 | Hv_44K_v2 | ACTATCAAAGACCTTGACCAAGGCTCCGCTAAAAATATTCTCCCTTCTCCATTCAAAAAA | 316 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.893 | 3.543 | 1.375 | 0.680 | 0.727 | 0.591 |
| Raw | 31.319 | 59.743 | 19.923 | 15.436 | 4.938 | 3.822 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5145.3 | 795 | 9e-22 | 211 - 265 | 100 | 55 / 55 | minus | ABC21914 |
| MLOC | AK368448 | 914 | 3e-21 | 861 - 914 | 100 | 54 / 54 | plus | ABC21914 |
| JLOC1 | JLOC1_3289.1 | 806 | 5e-22 | 222 - 276 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC21914 | 387 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus | ABC21914 |
| Harvest35 | U35_11864 | 387 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus |
Contig Sequence (387 bp)
>U35_11864 387 Hv_44K_v2 GCAGGAGATGATCTGCAACGTCGACCGCGACCGCGACGGCCAAGTTGACTTCGGCGAGTT CAAGTGCATGATGCAGGGGATCACCGTGTGGGGAGCTTGAACTTGAAGGCGGCACGGCAT GCTCCCTCTTCTGTTTCTCATGTATGTATGTATGTATCATTTCTAGACATTTTAGGGTGA TTTTTTTCACGACCGGGCTTTCTACCGTTGACTCCATCTGGTGCTAGGTCTTCAGGATCT TGCTTGATTAGTTTCATGCAAGCAGTAATCAGTTTCTTCATTTATTTTCCAACTTCTTGT TAATTCGGAAAACTGTACTATCAAAGACCTTGACCAAGGCTCCGCTAAAAATATTCTCCC TTCTCCATTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_11864 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |