- Probe CUST_34026_PI390587928
- Source Contig U35_32770
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34026_PI390587928 | Hv_44K_v2 | AAGTATGACATGGTTCGTGTGAAGATGCGAAGAGGTTGTGCTACATGAATATGTTTCTTT | 485 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.942 | 1.910 | 1.165 | 0.895 | 0.442 | 0.549 |
| Raw | 2128.860 | 3223.327 | 1753.460 | 2069.370 | 365.480 | 490.955 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_13394.2 | 1611 | 8e-25 | 1493 - 1552 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13394.1 | 1614 | 8e-25 | 1496 - 1555 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32770 | 588 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18273 | 2113 | 1e-23 | 2029 - 2088 | 98 | 59 / 60 | plus |
Contig Sequence (588 bp)
>U35_32770 588 Hv_44K_v2 TGGGTTCACCACGTGTCCATGGGGTTAACGACGGAAGTTCACCATATTCGACCCCGAAGC AAACAAGGCCTAGGAAATCAAGCCACTCCGGGGAGCAGCAACAACCTTTCAGTGGCAATG GATTCTGATATTACCTCTCACGATCATCCCCTGGATTAGTAGTGATTTGAGCCAGCGGAT GTGCTGGTAGCAACACGTGATTCCTTCTTGGGTTTGTCAGTTCGGTACCCAATAGATATA TGTTTTTTTTCTCTAGCCATTGCTATTCTTTTTAGTGTTGCGCCCAACGAAAGCATTGGC GTGGTGCCAAATTTTTGCCATGTTGCCCTCCTGTACAGTATATCACTGCCCAATCATTTC GACTTAAAATGAAACCGGTGATGGGTATAGTTTCCTTTTTTGTTAAAAACCCAGGAAGAA GCCGTGGGAACCTTTAGTTTTAGTGCCGAGTACTTGTATCTGAACACGGTTAGTTTTGCC GTGATAAGTATGACATGGTTCGTGTGAAGATGCGAAGAGGTTGTGCTACATGAATATGTT TCTTTTTTTTGCTCATCGAATAGTATGATATGTTTCTTTTGATTTGCT
Homology of Contig U35_32770 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |