barSeed - Barley Seed Development Database

Probe CUST_34021_PI390587928

Source Contig U35_18481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34021_PI390587928	Hv_44K_v2	TGTCTTTGTAATCCTTGTGAGCCTTCCATCTGGTCATTGCGATCGTGGATAGTAATGCTG	1064	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367514	1144	2e-24	1065 - 1124	100	60 / 60	plus	ABC12098
MLOC	MLOC_36795.1	785	2e-23	1 - 58	100	58 / 58	minus	ABC12098
JLOC1	JLOC1_23741.1	2033	8e-25	744 - 803	100	60 / 60	plus
JLOC1	JLOC1_23740.1	4894	8e-25	3814 - 3873	100	60 / 60	minus
Harvest35	U35_18481	1166	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1166 bp)

>U35_18481 1166 Hv_44K_v2
TGAAACCCAAATCCAGACCCCCGGCTTCCCCCAGATTCTTCGACCGCAAATCTCGAGATG
CCGAAGAAGATGGGCGTCAACTCCAAGGCGGAGGCCGCCCGCGAGCGCCGCTCCGCCGAG
GAGTCGGACCGCCGCCAGCGCGCCGAGCGCGCCAAGGAGGAGGAGTACTGGCGCGAGGCC
GAGGGCTCCAAGTCCCGCGCCGCGCGCCGCCGCGAGGAGGACGCCGAGAAGCGCGCCGAG
GCCGCCGCCCGCAAGGCCGAGAACCGCCGCCTCGCCGAGGCCGAGGCCGCCGCCGTCGCC
TCTGCCGTCTCCAAGACGGACGCCCGCAAGGCCAGCCGCGTCGGCGCCCCGGCCCCCAAG
GTCACCGAGGCCGAGCTCGTGCGCCGCCGCGAGGAGGAGCGCCTCCGCCTCGAGCGCGAG
GCCGAGGCCGCCAAGAAGCGCGCCGCGCGCACCGCCGAGGAGGAGGAGTACGAGCGCGTC
GTCCTCGTCGCCAACACCAACAGGGACGACTCCGTCATCGAGGCCTCGGGCGTCGACGAG
GCCATCGTGCGCTTGTCGCTCGTTGACTCGGAGGCGGCCTTGCCCGCTGACAGGCATCCT
GAGCGTCGCCTCAAGGCATCATTCAAGGCATTTGAAGAGGCAGAGCTCCCTAGGCTGAAG
GAAGAAAAGCCAGGCCTAACACTGAAACAGTACAAAGACATGATATGGAAGCTATGGAAG
AAATCCCCAGACAACCCTCTGAACAAGGCAACTGAGTGAGGATGCACTCGCAGTTCCGAA
TGGTAGGATTCTAAGGGATCCAACGGAACAGGACTGTAGCTGCCTCTGTATCTTTGACCG
TGGAGTGAAATTATGTGCGGCAGAGCTTGAACCAAATACTCGAGCTTCTCGGCAAATAAT
CAACAAACCGATGCAGTGTATATTCTGAGAGTTGCTTTTGATTAGAAATTTTGTCCAAGT
TCCTGTTGTACTTAGTTATGTTTGGGGCATGTTGGTACTTGAGTTTTGAACAGTTGGCAA
ATTTGAACTATGGCTACTATAGGTTATGCCATTTTCTCTGTCCATGTCTTTGTAATCCTT
GTGAGCCTTCCATCTGGTCATTGCGATCGTGGATAGTAATGCTGATGAAAAACAAAAAAA
AAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_18481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None