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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34019_PI390587928Hv_44K_v2CTTTCGGGTCTAAATGATATTGTTAAGATTTGTCATGTGAGTTATCTTGATCCCCCAAAA1414GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8862.0541.1880.8190.2850.291
Raw 45.70580.17040.36844.6353.5804.362



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC488952346e-2214 - 739758 / 60minusABC48895
Harvest35U35_1848314873e-251415 - 147410060 / 60plus



Contig Sequence (1487 bp)

>U35_18483 1487 Hv_44K_v2
CCTTCTAAAGTCCGTGGGTTACATTGGCGGAGATAGAGCACTTTGTGGACCCAGAGGACA
AGTCTCATCCAAAGTTTAGTGATGTTTCTGATCTAGAGTTCCTGATGTTTCCGAGAGAAG
ATCAACTGACAGGAGGATCCGCCACAAGACTTCAGCTCGGTGAAGCTGTTTCTGAGGGAA
CTGTGAACAATGAGACCCTTGGCTACTTCATTGGAAGGGTCTATCTCTTCTTGACACAGC
TTGGGATTGACAAAGACCGTCTACGATTCCGGCAGCATCTGCCAAATGAAATGGCTCACT
ATGCTGCTGATTGTTGGGATGCAGAGATCGAATGCTCTTATGGGTGGATCGAGTGTGTTG
GAATTGCTGATAGGTCAGCGTATGACTTGCGTGCCCACTCGGATAAAAGTGGTGTTCCAC
TCGAAGCTCATGAGAAATTCGCAGAACCCAGAGAAGTGGAGAAGTTAGTTATAACCCCAT
CAAAGAAGGAGCTTGGTCTTACTTTCAAAGGGAACCAGAAGGCGGTGCTCGAAGCATTGG
AAGCCATGGGTGAAACTGAAGCTCTGGGTATGAAAGCAGCTTTAGAGTCTAAAGGGGAGG
TTGAGTTTAAGGTCTGTACCCTTGGGAGGGATGTTACCGTAAAGAGGAATATGGTTTCAA
TTAACATGGAGAAGAAAAAGGAACATCAAAGGAAGTTCACTCCATCTGTCATAGAGCCAT
CATTTGGCATAGGGAGAATTATTTACTGCTTGTTCGAACATTGCTTCTATCAAAGGACTG
GCAGGACAGATGATGAGCAGTTGAATGTTTTTCGTTTCCCCCCTCTTGTTGCTCCAATCA
AGTGTACCGTGTTTCCACTGGTCAAGGTTGAGAAATTTGATATTGTCGCCAAGAAAATTT
CAAAAGCTTTGACAACAGCAGGGATTTCTCACATTATCGACATCACAGGCACTACAATCG
GTAAGAGGTATGCAAGGACAGACGAAATCGGCGTCCCCTTGGCGATCACAGTCGACTCAA
CTACAAGCGTGACTATCCGTGACAGGGACAGCAAGGATCAAATTCGTATTGAGGTCGACG
AGGTGGCTTCGGTTGTGAAGGAAGTGACCGATGGGCAGAGCACCTGGGCAGACATCATGT
GGAGATACCCAGCACACACCACCTTGGCCACCGATGAGGAAGAAGCTTCAGAAACCTGAA
GGGTACAGTCGAAGAGTCTTCCATGGGTTAAATGATATTTGGCTTTTGCAGTTTCGGATG
CGTGTCATGTTAACAGAAATGCTAATGGAGCGTTGCCCTGTAATCCTAGTCCCGTTTTCC
CTTCACGTATGGTTTTCATCCGTTCCTTGTCGATATGTACTGTATCTACATGTTCATCTC
GTGTGATTAAAAGGAAGAGACGTGTGCATATTTTCTTTCGGGTCTAAATGATATTGTTAA
GATTTGTCATGTGAGTTATCTTGATCCCCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_18483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g32650.16740.0protein|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2Bradi3g41550.16920.0
Arabidopsis v10AT1G29880.17290.0glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729