barSeed - Barley Seed Development Database

Probe CUST_34011_PI390587928

Source Contig U35_44753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34011_PI390587928	Hv_44K_v2	AAGATAGTGAGCCGTCAGATTTCTCCAATTATCCCACATAATTATCAACAGAGCAGCTAT	124	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370601	3881	7e-23	1499 - 1558	98	59 / 60	plus	ABC13060
MLOC	MLOC_53162.3	3836	7e-23	248 - 307	98	59 / 60	plus	ABC13060
MLOC	MLOC_53162.1	2731	7e-23	250 - 309	98	59 / 60	plus	ABC13060
MLOC	MLOC_53162.5	2665	7e-23	205 - 264	98	59 / 60	plus	ABC13060
MLOC	MLOC_53162.4	2635	7e-23	224 - 283	98	59 / 60	plus	ABC13060
MLOC	MLOC_53162.2	3658	7e-23	248 - 307	98	59 / 60	plus	ABC13060
JLOC1	JLOC1_34125.1	2661	4e-23	250 - 309	98	59 / 60	plus
Harvest21	ABC42855	184	3e-25	125 - 184	100	60 / 60	plus
Harvest35	U35_44753	184	3e-25	125 - 184	100	60 / 60	plus

Contig Sequence (184 bp)

>U35_44753 184 Hv_44K_v2
GGGAAATCGGATTTGCCAAAGAATTGCATCCTGGGATTGGAATCTGAGTGGAGGGAAATC
TACTTATCATGCACTTTACCCTAGGGCCTGGACCGTTTATGATGGAGAACCTGACCCGGA
TCTCAAGATAGTGAGCCGTCAGATTTCTCCAATTATCCCACATAATTATCAACAGAGCAG
CTAT

Homology of Contig U35_44753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None