- Probe CUST_34010_PI390587928
- Source Contig U35_44756
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34010_PI390587928 | Hv_44K_v2 | CATCATGGAGGATGAATAATTTTCCATATTACGAATTCGTCGACCGGGACATAATGTACA | 198 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.169 | 1.231 | 1.327 | 0.879 | 0.332 | 0.284 |
| Raw | 150.762 | 257.053 | 231.370 | 245.506 | 32.078 | 30.493 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC42863 | 425 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44756 | 425 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus |
Contig Sequence (425 bp)
>U35_44756 425 Hv_44K_v2 ATTTGATTCTTGGATTGGTGTCAACCGTGCCTGCGTTTGTCATCCCTCTGTTCCTCGTAG GAAAGGCAGATAGTATTAGAAGTTTAAAAGATCGTTACTGGGTCAAGGCTAATGTTTGGA TTATAATTTTCAGTTATGTCGGTAACTACTTTTGGACACATTACTTTTTCACAGTTCTTG GCGCGTCATATACTTTTCCATCATGGAGGATGAATAATTTTCCATATTACGAATTCGTCG ACCGGGACATAATGTACAAAGTTGGCTCATTGTTTTATGCAATATACTTCCTCGTCAGCT TTCCGATGTTCTCAAGGATCGATGAAAAGGCAGAGAAGTGGGACATTCCCAGGGTGGCCG TCGACGCTCTGGGCGCAGCGATGCTCGTCACGATAATACTCGATTTATGGCGCATATTCC TGGGG
Homology of Contig U35_44756 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |