barSeed - Barley Seed Development Database

Probe CUST_34001_PI390587928

Source Contig U35_18493

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34001_PI390587928	Hv_44K_v2	GGAAAACCATTTTGAAAACACAGACGCCGGATTATATCACACAGATACCAATAAGCACAT	1274	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.016	6.062	1.154	0.731	0.574	0.508
Raw	115.158	238.522	35.584	37.637	9.404	9.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361781	1409	3e-21	1320 - 1379	97	58 / 60	plus	ABC08775
MLOC	MLOC_53370.1	1583	3e-21	1174 - 1233	97	58 / 60	plus	ABC08775
MLOC	MLOC_53370.2	1696	3e-21	1287 - 1346	97	58 / 60	plus	ABC08775
MLOC	MLOC_53370.3	1484	3e-21	1075 - 1134	97	58 / 60	plus	ABC08775
JLOC1	JLOC1_34286.1	1396	2e-21	937 - 996	97	58 / 60	plus
Harvest21	ABC08775	1334	3e-25	1275 - 1334	100	60 / 60	plus	ABC08775
Harvest35	U35_18493	1334	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (1334 bp)

>U35_18493 1334 Hv_44K_v2
CTCATCGCTCCCTCCTCTCATCCCCTCCTCCTCCTCCCATGGCCTTCTCCCCGGCCACCA
CCGCCGCAGCCACGGCGGCGGGCGCCATCACATTCACCTCCGGCCGCGTCGCGAGCTCGC
CGCCGTCCTCGCTGTCGTCGCCGTTCCTCCCGCGCGCGGCCGGCGCGATCGTCGCGAGGA
GGGGGCGCGCCGGTGCCCGCGCGGCGTCGGCCGTGCCGGTGCGCGCGCAGGCCGCCGGGG
CCGCGAAGAAGAAGGTGCTGGTCGTCAACACCAACAGCGGGGGCCACGCGGTCATCGGGT
TCTACTTCGCCAAGGCGCTCCTCGCGGCCGGGCACGACGTCACCCTGCTCACCGTCGGCG
ACGAGGCCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACCAGCG
CCGGGGCCAAGACGGTGTGGGGCGACCCGGCGGACGTCGGCGCGGCCGTCGGCGCTGCGT
CCTTCGACGTCGTGCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAGCCGGTGGCGG
ACTGGGCCAAGGCGGCCGGGGTCGGCCAGTTCCTGTTCATCAGCAGCGCCGGGATCTACC
TCCAAACCGACGAGCCGCCGCACGTCGAGGGGGACGCCGTGAAGGAGAGCGCCGGGCACG
TCGGCGTGGAGAAGTACATCGCGGCGGAGTTCGGCAGCTGGGCCTCGTTCCGGCCGCAGT
ACATGACCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGAATTGTGC
GGAAGCGGCCGGTGCCGATCCCGGGGTCGGGGATGCAGCTGACCAACATCTCGCACGCGA
GGGACCTGGGAAGCATGCTCACGCTCGCCGTGGAGAACCCGGACGCCGCCGCCGGGAAGA
TATTCAACTGCGTGAGCGACCGCGGCGTGACGCTCGACGGCCTGGCCAAGATGTGCGCGG
CGGCCGCCGGCGCCACCGTCGAGATCGTCCACTACGACCCGGCCGCCGTCGGCGTCGACG
CCAAGAAGGCCTTCCCCTTCCGCAACATGCATTTCTACGCGGAGCCACGGGCGGCCAAGG
AGGTGCTGGGATGGACGAGCACCACCAACCTGCCGGAGGACCTCAAGGAGCGGTTCGCCG
AGTACGCGAGCAGCGGCCGGGGGGAAAAGGCCATGACCTTCGACCTCGACGACAAGATCC
TCGCCGCCGTCGGGGCGGCGCCGGTCAGCGTCGCCGCCTAGGCGCGCGTGTTCGTTCTTC
GATGCACGGCAGCGGGAAAACCATTTTGAAAACACAGACGCCGGATTATATCACACAGAT
ACCAATAAGCACAT

Homology of Contig U35_18493 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g11110.1	393	3e-174	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi1g54030.1	395	0.0
Arabidopsis v10	AT3G63140.1	406	4e-162	\| Symbols: CSP41A \| chloroplast stem-loop binding protein of 41 kDa \| chr3:23327006-23328620 REVERSE LENGTH=406