- Probe CUST_3399_PI390587928
- Source Contig U35_11867
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_3399_PI390587928 | Hv_44K_v2 | TGTGGAGTAGTAGGCCTCTAGCCTGCAGGATCAAAATCAACGAAACTACTAATTAACTCT | 491 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.185 | 0.150 | 0.831 | 2.561 | 1.241 | 1.918 |
Raw | 39.701 | 49.433 | 259.650 | 1226.724 | 208.227 | 347.770 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12427.1 | 1107 | 3e-21 | 1023 - 1082 | 97 | 58 / 60 | plus | ABC22030 |
JLOC1 | JLOC1_8335.1 | 1175 | 2e-21 | 1023 - 1082 | 97 | 58 / 60 | plus | |
Harvest21 | ABC22030 | 554 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus | ABC22030 |
Harvest35 | U35_11867 | 554 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus |
Contig Sequence (554 bp)
>U35_11867 554 Hv_44K_v2 CTCCACTTGACCATCTTCGAGTCCTGCACCAGAAATCACCAATTGCCCACATTTCAAAAG TGAAAGCGCCTTTGCTTATGCTTCTCGGGGGAGCGGATCTTCGGGTGCCCGCTTCCAATG GCCTACAGTACGCAAGGGCTCTGAGAGAAAGAGGAGTCGAGATCAAAACCATCATGTTCC CAGAGGACACGCACGAAATCGATATACCGCGGTCGGACTTCGAGAGCTTCCTCAACATGG GAGTCTGGTTCAGGAAACATCTCAAGCAGATCTGACCCAGAGAGTTTCGGGAGCTTCCTC GACATAGCCACAGAACTTCGAAGCTTCTTGGTGATTTTGTCTTTCTGTGAGGCGACTGAA GCATTTTGAGGATCGACAACTAGTATATATTTCTCCCAAATTATGAGCGTAAAGAGATTG ATAAAAATGAACAGCATCAGTCTGTGGTTATTGGTTGACGCAGCCTGGGCAATGTGAGTT TGGCTTCTGTTTGTGGAGTAGTAGGCCTCTAGCCTGCAGGATCAAAATCAACGAAACTAC TAATTAACTCTAGA
Homology of Contig U35_11867 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |