barSeed - Barley Seed Development Database

Probe CUST_33998_PI390587928

Source Contig U35_18496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33998_PI390587928	Hv_44K_v2	TTCATTTTCGGCTCGCTTTTCCTCGAGTCAATAAGGCTTTAATTGCCTCTTTGCTTGGAC	808	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.984	1.935	0.988	0.880	0.427	0.432
Raw	1162.760	1750.489	799.223	1128.831	188.646	208.621

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28666.1	1130	2e-24	77 - 136	100	60 / 60	plus	ABC09013
MLOC	AK365140	865	2e-23	808 - 865	100	58 / 58	plus	ABC09012 ABC09013
Harvest21	ABC09013	882	3e-25	809 - 868	100	60 / 60	plus	ABC09013
Harvest35	U35_18496	882	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (882 bp)

>U35_18496 882 Hv_44K_v2
CAGCCGACCCTGACCCCTCTCCTCACCCTCACCCTCACCACCGCCCCCTCGTCCGCCCGC
CGCCGCCGCCGCCGCCGCCATGTGGAAGCGCGCCGCCTCCCTCCTCCTGGCCCGCCGCTC
GGCCCTCGCCGCGCAGCGCGCCCCGGCGATCTCGGGATCCGCCGCGTCCGCCCTCCGCCG
CGCGCCCGCCTTCTTCTCCACCCTCGATGTGGGGCAGGCGAGGACGCGGGTGGAGGACGT
GATGCCGATCGCCACGGGGCTCGAGCGCGAGGAGATCGAGGCCGAGCTCCAGGGAAAGAA
GAGATTTGACATGGACGCCCCCGTCGGCCCATTCGGCACCAAGGAAAATCCAGCTATCAT
TCAATCATACTTCGACAAAAGGATTGTTGGTTGCCCAGGCGATGAAGGAGAGGATGAGCA
TGATGTTGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACACGAATGCCCAGTCTGCACTCA
GTATTTCAAGCTTGAGGTTATTGGGAACGGAGGAAACCCTGATGGACATGATGATGAGGA
CGACCACCACCACCATTAAGGGCATGTCTACTGATGAAACAGTGGACCTGTGCCGACTTT
TTTTCTTGCTGAGATGCTTTGAAGCTGTGAAAACATCAGCTTTTTTGCGTGCCCGTAGAG
TTTTAATACCCATGCCAATCAGTTTGCTGTTCTCAGTTGTCATGACTGGGAAATAGTAAC
AGCAAAGGGCCCTGGAAAACATAGTTTTTCTGTCTGGAAAATTACGCACAGGAATAATGC
GATTCATTAAACAAATAGTGATGTCCCTTTCATTTTCGGCTCGCTTTTCCTCGAGTCAAT
AAGGCTTTAATTGCCTCTTTGCTTGGACGGTTCCGTGTTCAG

Homology of Contig U35_18496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05080.1	155	5e-65	protein\|cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g51120.1	164	1e-72
Arabidopsis v10	None