- Probe CUST_33992_PI390587928
- Source Contig U35_44764
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33992_PI390587928 | Hv_44K_v2 | TGCGTTGCAACGGGGGAAAACAACAATGGACTTGTAAAATGAGACCGAGTTTAAGTAGGC | 30 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.933 | 1.982 | 1.525 | 1.084 | 0.391 | 0.419 |
| Raw | 69.099 | 235.794 | 153.194 | 174.796 | 21.053 | 24.928 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20665.2 | 2463 | 3e-22 | 2398 - 2456 | 98 | 58 / 59 | plus | ABC42885 |
| JLOC1 | JLOC1_14329.2 | 2074 | 1e-22 | 1753 - 1811 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_14329.1 | 2552 | 1e-22 | 2231 - 2289 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC42885 | 406 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus | ABC42885 |
| Harvest35 | U35_44764 | 406 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus |
Contig Sequence (406 bp)
>U35_44764 406 Hv_44K_v2 TTTTTTTTTTTTTTTTTATTTTAACTCAGGGCCTACTTAAACTCGGTCTCATTTTACAAG TCCATTGTTGTTTTCCCCCGTTGCAACGCACGGACCCTTTTCCTAGTATATATAACAAAC ATATACATGATCCCATACACAAAAAACTCACCTGTACGGCAAACTCCAGGATAGCATTGT GAACTATCTACACAGCATCTATTTTACAGAGGGCTGCAACATACCAGAGTAACATATAAC TACCTATTCACAAACATGCCGACATGCTCACCTTGGAACTCACCGTGCCACGGCGATGGA TAAATATGATCTCTCAAAAACATTCGCCTCTGTCTTGAGCCTTGAGATCTCCATAGCATT GTTCACCCTCTGCGTGATGGCGGACCGCATTATGCTGCGCATGAAA
Homology of Contig U35_44764 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |