- Probe CUST_33989_PI390587928
- Source Contig U35_44767
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33989_PI390587928 | Hv_44K_v2 | CGATCTGTATAAATTTCCCAGATCTCTTGGCTATCATCATGTCATGTTGCTATCAAAAAA | 11 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.652 | 0.854 | 2.977 | 3.189 | 1.211 | 0.947 |
| Raw | 3.001 | 8.464 | 31.817 | 50.757 | 5.792 | 5.248 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36987.1 | 1359 | 9e-22 | 1248 - 1302 | 100 | 55 / 55 | plus | ABC42888 |
| MLOC | MLOC_36987.2 | 1356 | 9e-22 | 1245 - 1299 | 100 | 55 / 55 | plus | ABC42888 |
| JLOC1 | JLOC1_23888.3 | 1476 | 5e-22 | 1228 - 1282 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_23888.2 | 1269 | 5e-22 | 1021 - 1075 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_23888.1 | 1410 | 5e-22 | 1162 - 1216 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC42888 | 411 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC42888 |
| Harvest35 | U35_44767 | 411 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (411 bp)
>U35_44767 411 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATAGCAACATGACATGATGATAGCCAAGAGATCTGGGAAATT TATACAGATCGATAGCAGAAAGTAGCTAGCTCCAAGAAGAGTGCCAAAAGGATAGAAAAC ATTCCGATCGAGAGCAACATGTATTTCTCCCTAAATAAATGGCTCAACACTCGGCCGCTC CCCTCTTCCGGCTCACCGCCGCTCGTAGCGAGGACGCGTTGAGATCCGAGCTCCGCAGCA CGCGCAGCCTCTTCGCGGTGGCGATGAACATGTCCCATGGGACGTCTCCAACCAGCATCT GGTCGCCCTCGTCGTCCTCGTACACCAAAGTGTACTCACCGCTGCCGTCGAGCAGCCCTG TTATCGCCGCAGGCTTCTCCCCCGCGCAGGAGCTCTCGTCCCTTTGAGCGG
Homology of Contig U35_44767 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |