- Probe CUST_33985_PI390587928
- Source Contig U35_32793
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33985_PI390587928 | Hv_44K_v2 | ATTAAAGGTGCTTGTTTGGGTTGTTATCTGTACGTCTCTTTCTGTTAATGTTGCTCATTG | 253 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.022 | 1.055 | 1.242 | 1.030 | 0.410 | 0.316 |
| Raw | 92.734 | 153.337 | 153.409 | 199.343 | 28.544 | 23.702 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_32793 | 313 | 3e-25 | 254 - 313 | 100 | 60 / 60 | plus |
Contig Sequence (313 bp)
>U35_32793 313 Hv_44K_v2 TGGGGTTTTCGGTGGGCGAAGATGGGGAAATCGAAGCGCAGGCACCTGATTCTTTATCGA TGTCTGTTGTTCTGGGCTGCGGCTCGTGTTCTCTTAAGGCACGACTGGTTATAAATAGGA CTTGATTCATCGTGCCTCTGCTAGCTTATTCATTTTTTCTTGTGTACCTGAGCCCTGATG GTTGTGATGTGATGAATGATGTTTCTGACCATTGTGCTCAGCTAACCACCTTTGTTAATT CAAGTCGCTGTGAATTAAAGGTGCTTGTTTGGGTTGTTATCTGTACGTCTCTTTCTGTTA ATGTTGCTCATTG
Homology of Contig U35_32793 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |