barSeed - Barley Seed Development Database

Probe CUST_33981_PI390587928

Source Contig U35_44772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33981_PI390587928	Hv_44K_v2	GAGCATGCTCCAAGTTCTCATAGTTGTGAAAGCTTTGCTATATATATGTGATTGGAGGAA	78	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9014.2	1954	2e-24	1150 - 1209	100	60 / 60	plus	ABC42898
MLOC	MLOC_9014.3	1908	2e-24	1120 - 1179	100	60 / 60	plus	ABC42898
MLOC	MLOC_9014.6	708	7e-23	588 - 647	98	59 / 60	plus	ABC42898
JLOC1	JLOC1_5930.7	1078	8e-25	581 - 640	100	60 / 60	plus
JLOC1	JLOC1_5930.2	1617	8e-25	1120 - 1179	100	60 / 60	plus
JLOC1	JLOC1_5930.1	1110	8e-25	613 - 672	100	60 / 60	plus
Harvest21	ABC42898	562	3e-25	79 - 138	100	60 / 60	minus	ABC42898
Harvest35	U35_44772	562	3e-25	79 - 138	100	60 / 60	minus

Contig Sequence (562 bp)

>U35_44772 562 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCAATAACATGATTTTATTAACCAGAAATAAGAATTTTCATC
AAGACACCAACTATATAATTCCTCCAATCACATATATATAGCAAAGCTTTCACAACTATG
AGAACTTGGAGCATGCTCTAAAACCTGACCAAGTACCATGTTATTCCTCAATTTGGTGTC
CATCTTCAAGGAATATACGGATGGCATTGCCATCTCTCTCTGGATCACCGCTAGCAAATC
CTTGGTATGCCATGTCAAAAAATGGGAAATGGTTATTCAACTATAGAAACACAAGAGAGA
TATGTAAACCCTTAACTGATAGCAAGGAACTAAGCTTTATGGCTAAACAGTACCAAACGG
AAGTACTGAAATGATCTGCTGATTGTGAGTAGTTTGAAACCAACACTTTTCATATCAATG
TTTGTGTGCAATAACCATCTAGCCACAGACTACATCAGTTATCTACAAGACAAACAGTTT
CAGACATTTACGCACTAACAGTTCCAGTTAACTATTTTTCAGACTAAAGCAATTTCAGTA
AACTGCTTGTCTTACTAATAAC

Homology of Contig U35_44772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None