- Probe CUST_33978_PI390587928
- Source Contig U35_44775
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33978_PI390587928 | Hv_44K_v2 | GATACCACTGCACAAAGTAGAACTATGCCCCCCAAATTACATTTGTATTTAGAAAAACTT | 93 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.774 | 1.423 | 1.095 | 1.342 | 0.450 | 1.200 |
| Raw | 13.191 | 35.840 | 25.839 | 51.600 | 5.291 | 16.952 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63433.2 | 1466 | 9e-22 | 1346 - 1403 | 98 | 57 / 58 | plus | ABC42904 |
| MLOC | MLOC_63433.1 | 2098 | 9e-22 | 1976 - 2033 | 98 | 57 / 58 | plus | ABC42904 |
| JLOC1 | JLOC1_41549.1 | 1650 | 5e-22 | 1298 - 1355 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC42904 | 180 | 3e-25 | 94 - 153 | 100 | 60 / 60 | minus | ABC42904 |
| Harvest35 | U35_44775 | 180 | 3e-25 | 94 - 153 | 100 | 60 / 60 | minus |
Contig Sequence (180 bp)
>U35_44775 180 Hv_44K_v2 TTTTTTTTTTTTTTTTTATCCTAATTAATAATTTCTGAAGACATGTTCCATAAAGAAAGA AACATATTACCTTTGTCCCAAATTACTTGTTTTAAGTTTTTCTAAATACAAATGTAATTT GGGGGGCATAGTTCTACTTTGTGCAGTGGTATCTGAACTGCATGGCGCCATCTATCAACG
Homology of Contig U35_44775 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |