barSeed - Barley Seed Development Database

Probe CUST_33968_PI390587928

Source Contig U35_44790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33968_PI390587928	Hv_44K_v2	TTCAAGGGGATCGAGAAGCCCTCCTACTTTGATCGCTGGATCAACCTGAGGATCCCCCTC	218	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54191.1	1742	7e-23	949 - 1005	100	57 / 57	minus	ABC02438 ABC02441 ABC02445
MLOC	MLOC_54191.2	551	7e-23	70 - 126	100	57 / 57	minus	ABC02438 ABC02441 ABC02445
JLOC1	JLOC1_34868.1	1616	4e-23	911 - 967	100	57 / 57	minus
Harvest21	ABC42931	456	3e-25	219 - 278	100	60 / 60	plus
Harvest21	ABC02438	1276	1e-23	438 - 494	100	57 / 57	plus	ABC02438
Harvest35	U35_44790	456	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_676	1236	1e-23	446 - 502	100	57 / 57	plus

Contig Sequence (456 bp)

>U35_44790 456 Hv_44K_v2
CCAGACACCGGCCCGTGCTGACCCAGTTTTGCAGGGACCTCACCGGCATCCGGCAGGAGG
ACGTAGACGGCGGCGTGGATCTCGGCGAGGCGCTCTGGATGCACGACGCTTGGCTGAAGG
CGGCAACGGCGAAGGCAGGGAACAGGAGATGCGTCCGCTTGGCCGTCGTGACCTGGGGGG
ACTGGGATTGTCGCACCATGCTGGAGTTCGAGTGTCGATTCAAGGGGATCGAGAAGCCCT
CCTACTTTGATCGCTGGATCAACCTGAGGATCCCCCTCCTCCTTCTCCTCGCCGCCGCGG
CCTCCCCGGCGGCCGCGCTCTACTCCGCCGGCTCCCCGGTCCTCCAGCTCAACCCCAACA
ACTTCAAGAAGGTGTTGAACGCGAACGGNGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGT
GCGGGCACTGCAAGCAGCTGACGCCGATTTGGGAGA

Homology of Contig U35_44790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None