barSeed - Barley Seed Development Database

Probe CUST_33965_PI390587928

Source Contig U35_49408

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33965_PI390587928	Hv_44K_v2	GTGCGCAGTGTATTACTCCCTTAGTTTCTAAATATAAGTCTGTCCATATGTAATTTGTAG	291	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.210	0.366	0.962	1.902	1.136	1.190
Raw	24.987	68.038	161.835	492.762	105.326	118.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39611.1	382	7e-23	182 - 241	98	59 / 60	plus	None
JLOC1	JLOC1_25835.1	293	4e-23	165 - 224	98	59 / 60	plus
Harvest21	ABC51100	453	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_49408	453	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_49408 453 Hv_44K_v2
AGATCACGGACCCGCGCTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCAGTACTGGG
TGCTCTGCCACGTCCGCCGCAGCATCAGGGAGAACGTCAAGCCGCGCTCCCGCCGGCGGT
AGGGGGTCAAGCCGCCGCGCCTCGGCTCGGTCGCCGGCCGGCGCGAGGCGGGGAGACCGA
GAATGTTTCCCCCAAGAATTTCGTTTTGCGTTTCTTGTGTTCGTCGTCCGGCTCTGGCAT
GTACGTGCTCCGTTTACTTGCGCCATGTGCAGTGTAGGGAAGAAAATAAACGTGCGCAGT
GTATTACTCCCTTAGTTTCTAAATATAAGTCTGTCCATATGTAATTTGTAGTAAAATATT
TCAATAAAACTTATATATATAGAAAGTAAAATATTTCAATAAAACTTATATATATAGAAA
GAGGGAGTAGTACGCCGTTGGCTTCTCCTGTTC

Homology of Contig U35_49408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None