barSeed - Barley Seed Development Database

Probe CUST_33961_PI390587928

Source Contig U35_25455

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33961_PI390587928	Hv_44K_v2	GCTTGTGTCTCTGAGCAAAAGTATATGCAATAAAGCGTCTGTTGACCATTTGATGACAAA	334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68770.1	3251	6e-24	1304 - 1362	100	59 / 59	minus	ABC09626
MLOC	MLOC_68770.2	4199	6e-24	921 - 979	100	59 / 59	minus	ABC09626
JLOC1	JLOC1_45530.1	2261	3e-24	1601 - 1659	100	59 / 59	plus
JLOC1	JLOC1_45529.1	2929	3e-24	916 - 974	100	59 / 59	minus
Harvest35	U35_25455	408	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (408 bp)

>U35_25455 408 Hv_44K_v2
GAGGCACGGTATTCCTGGGCTGGTTAACGTGTTTGGTATAGAATCCCCTGGTTTGACGTC
AAGCTTGGCAATTGCAGAACACATCGTTTCAAGGCATAACAGCACCTGATTCTCGAACAA
TCACCGATTGATGAATTAAAGCTGGATGAACCCAGGACGGCTGGAGGCTATCATGTGAAT
CGCATTGCTTACAATGATATTTCCTTTTATTTTGAGAGAGAACAAGATGAAGCCTGTAAA
GATGTGGCTCTCCAGCCTAGTCGAATAAACAGAATATGTCGATTGTAGGTTGATGTCGCA
TAGGTTGTGCGTGAAGGGATACACTGCATTACCAGCTTGTGTCTCTGAGCAAAAGTATAT
GCAATAAAGCGTCTGTTGACCATTTGATGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_25455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None