barSeed - Barley Seed Development Database

Probe CUST_33959_PI390587928

Source Contig U35_25457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33959_PI390587928	Hv_44K_v2	CCCCCTTGATTCATTACTGAATCAACTGGAGAATGACCGTGATGCATACTACCAGTTACA	467	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.399	1.442	1.099	0.755	0.276	0.985
Raw	40.978	65.465	43.657	45.203	5.393	20.940

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10366.1	851	8e-25	748 - 807	100	60 / 60	plus
Harvest21	ABC25555	553	3e-25	27 - 86	100	60 / 60	minus	ABC25555
Harvest35	U35_25457	553	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_25457 553 Hv_44K_v2
GCGGAGCAATGATCAGCCAGGCGGTTAGATGTAACAAGAAATGAGCAGGAAAGCTACAAG
CACGCTCTCTAATAGTGACACAATCTCTGGCAGGGTCTATCAACCTAAATGTTGATGCTG
CTTTGATATGTGATCAGCTGAGAGGGGCGGGGGCGCTCCTTTTGCCTTTGTGGCAGAATA
CGGCCGATGTCCTATCGCGTTACTACCATGTTAGCGCAGTCGGTGGGAGCAACCGAGTGA
TCATCAAGGTCAATAGGGGTTTCGTGGCCTAGTTAAAGTTATGTTTGAGCACTGCCCAAG
AGCCCATAATTAGTAGCCATGCAAGTTAGTGATCCATAGTTCCTGGTCGGAGGATCCACC
AGATTTTCTTGTAGTACCAGTTGGTACACGAAACAACCCTGTCTGCTAGTTAATGTAGTC
CGTTTTGCTGTCAAAAAATAAATAAGAAATAACTGCTGCACATAAAGCCCCCTTGATTCA
TTACTGAATCAACTGGAGAATGACCGTGATGCATACTACCAGTTACATGGTTTATTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_25457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None