barSeed - Barley Seed Development Database

Probe CUST_33958_PI390587928

Source Contig U35_37430

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33958_PI390587928	Hv_44K_v2	CTAATGTGTGTCGTTGAATCATTGCACTACCAGGTTGGAACCTCTGAAAGGATTAAAGGC	441	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.295	1.331	2.572	2.446	0.676	0.709
Raw	4.045	37.496	63.518	94.720	9.284	10.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_37430	523	3e-25	442 - 501	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_37430 523 Hv_44K_v2
CTCGGAATCGATGACTGCTTCGAGGGGGTTCTGTGCTTTGAGACATTGAACCCGGCATGG
CCCACTCCTGTGCTGTCTGACAAAGTTGAGATCTTGGATATAATGAAGCACCTGGCTTAT
CCTGAGCCTGGGGTTGAGCTGCCAAAATCACCAATCCTGTGCAAACCGAACATAGATGCA
ATGCTGCATGCCCTCAAGCTTGCCGACATCAATCCTCAGACTACTGTAAGTCCCGAATAA
CTGAATGGTCATATTCAGAGAGAGATTCATAGGTACCTCATGTTGAATGGTGTGCTAACT
GGCTAAGAAACACGTACCAAATATTTTTCGATGACAGGGTCAGGAACATACAGGCCGGGA
AGCAGATTGGAATGCACACTGTCCTGGCATGTAAAATCCTGCCTCCGGTTATGTCGCACG
AATTTGGTTGATCAAAGTTTGCTAATGTGTGTCGTTGAATCATTGCACTACCAGGTTGGA
ACCTCTGAAAGGATTAAAGGCGCTGACCATGCCTTGGAGAGCC

Homology of Contig U35_37430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None