barSeed - Barley Seed Development Database

Probe CUST_33956_PI390587928

Source Contig U35_37435

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33956_PI390587928	Hv_44K_v2	ATAACTATGTTGATGCAAGCATATCTGTTGCTCTTGTACCAGAACTCGGCAATCCTGACA	152	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63089.5	5343	2e-24	1947 - 2006	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.7	4173	2e-24	1940 - 1999	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.8	4446	2e-24	1940 - 1999	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.6	3988	2e-24	1940 - 1999	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.1	3315	2e-24	1493 - 1552	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.2	3598	2e-24	1947 - 2006	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.3	3736	2e-24	1947 - 2006	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.4	2314	2e-24	1493 - 1552	100	60 / 60	minus	ABC39248
JLOC1	JLOC1_41312.5	4151	8e-25	1950 - 2009	100	60 / 60	minus
JLOC1	JLOC1_41312.4	4407	8e-25	1950 - 2009	100	60 / 60	minus
JLOC1	JLOC1_41312.3	4622	8e-25	1950 - 2009	100	60 / 60	minus
JLOC1	JLOC1_41312.2	4113	8e-25	1950 - 2009	100	60 / 60	minus
JLOC1	JLOC1_41312.1	3860	8e-25	1950 - 2009	100	60 / 60	minus
Harvest35	U35_37435	615	3e-25	153 - 212	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_37435 615 Hv_44K_v2
AAGATGATGTCAAATGCGAAGTTCATTTACCCACACAACACCCCGACTACAAAAGAGGCC
TACTGTTACAGGATGATATTTGAGAGGTTCTTCCCCCAGGTGAGCAAATAAAACAGCAAG
AACATGAAACAGAAAACTCACTTTTCCATGGAATAACTATGTTGATGCAAGCATATCTGT
TGCTCTTGTACCAGAACTCGGCAATCCTGACAGTGCCAGGCGGGCCAAGCGTCGCATGCA
GCACGGCGAAGGCAGTAGAGTGGGATGCTCGGTGGTCGGGGAACCTGGATCCCTCAGGGA
GAGCAGCACTTGGAGTCCATCTCTCGGCCTATGAGCAGGAGCATCTCCCAGCAACCATCA
TGGCAGGAACCAGCAAGAAGCCGAGGATGATCAAGGTTGCGGCACCTGGTGTCGCAATTG
AGAGTTGATGGTGTCCTGTCCTGCTTGCCGTTTCTGATAAGAAATAAGATGTACCTAGTC
TTGCCATTAGAGTGATGCAGACCTAAGGTTGAGTGAAGATTGTGCATTAATGCTTCTATA
GTTCTTATGAAATCAGAGACCGGATGATTTCTAATCCTTTTTTGGCAACTTATATTAAAA
CATTACTGCATGATG

Homology of Contig U35_37435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None