barSeed - Barley Seed Development Database

Probe CUST_33948_PI390587928

Source Contig U35_13485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33948_PI390587928	Hv_44K_v2	ATTATGTCCTCGTATCAAACATTTTTGCTGAGATGGGCAAGTGGAACAATGCCAAGGAGG	401	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.920	0.866	1.827	1.687	0.631	0.491
Raw	11.808	16.679	31.775	45.393	5.840	3.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65093.1	3712	2e-24	1281 - 1340	100	60 / 60	minus	ABC49776
JLOC1	JLOC1_42807.1	3477	8e-25	1053 - 1112	100	60 / 60	minus
Harvest21	ABC23922	562	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_13485	563	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_13485 563 Hv_44K_v2
GATGATTAATGCAGCTGGGATGCATGGTCATGGCAAGCAAGCTATAGATCTTTTCAAGAG
AATGGTAGAAACTGGTGTTGCTCCTGATCATGTTTCATTTCTCGCTCTGCTATATGCTTG
TAGTCATTCAAAGCTTGTTGATGAGGGCAAATGTTATCTGAATATGATGGAGACCATGTA
CAGGTTAGAACCATGGCAGGAACACTATGCTTGTGTGGTTGATCTTCTTGGCCGCTCAGG
CCAGACCGAGGATGCATACGAGTTCATCAAGTCTATGCCTTTGGAACCAAAATCGGTGGT
GTGGTGTGCACTCCTTGGGGCATGCCGCATACACAAGAACCACGAGCTCGCTGTGGTTGC
AGCCGATAAGCTTCTTGAGTTGGAACCAGATAACCCAGGTAATTATGTCCTCGTATCAAA
CATTTTTGCTGAGATGGGCAAGTGGAACAATGCCAAGGAGGTCAGAGCCAGGATTTCAGA
ACGCGGGTTGAGGAAGGACCCGGCCTGCAACTGGATTGAGATTGGAAACAACGTCCACAC
CTTCACCGCAAGAGATCATACAC

Homology of Contig U35_13485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39410.1	951	3e-113	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi5g12970.1	941	2e-118
Arabidopsis v10	AT3G63370.1	884	5e-74	\| Symbols: OTP86 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:23402080-23405180 FORWARD LENGTH=884