barSeed - Barley Seed Development Database

Probe CUST_33941_PI390587928

Source Contig U35_49417

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33941_PI390587928	Hv_44K_v2	TGGTGTAATTTATTTACGTGACGGTGTCTGACGAGAACTACCTGCTGACAGAGGTTGCTT	365	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.516	1.150	0.870	0.458	0.502
Raw	1051.362	1730.155	1133.784	1354.748	244.675	297.187

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4523.3	904	2e-24	56 - 115	100	60 / 60	minus	None
MLOC	MLOC_4523.1	4688	2e-24	66 - 125	100	60 / 60	minus	None
MLOC	MLOC_4523.2	3889	2e-24	66 - 125	100	60 / 60	minus	None
JLOC1	JLOC1_2825.2	4598	8e-25	4437 - 4496	100	60 / 60	plus
JLOC1	JLOC1_2825.1	3799	8e-25	3638 - 3697	100	60 / 60	plus
Harvest21	ABC51111	429	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_49417	429	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_49417 429 Hv_44K_v2
CGTGATCCAAGACATCCGCTATATAGATGTTGACTTGGACGGATGCGAAGATGTGGATGA
AGAGCTGTGCAGCAGTGTCCAACAGCCCGTGGCCTCTGGTAGGGTTTTGCCCAAGTGGTC
AGCCGGCGGTAATGCCCCCCCACCTAATATATTTGAAGAATTTAAATACACCAACTAGGC
TTGTAGGCATGTAAGCCGTCATATATATAGGTCTCGTGTTCCGGGGTAGTAGTTTTTGTA
GGCTGTAGCGCATGTAACATGGTATTCTTCTGTGGGGAAATCCGGATTCGGCGGGCATGG
AAATGTATGTACCACATTTGCAGTAAGAGACAAGTGTGTAATTGGAAGTGCCCGTTGTAT
CCACTTGGTGTAATTTATTTACGTGACGGTGTCTGACGAGAACTACCTGCTGACAGAGGT
TGCTTGATT

Homology of Contig U35_49417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None