- Probe CUST_33939_PI390587928
- Source Contig U35_49419
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33939_PI390587928 | Hv_44K_v2 | AACAGAAGGCTCACACCCAAATCAGATGACTATGCTTTTGGAATCCTTCTCCTTGAGCTC | 3 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.605 | 1.978 | 4.360 | 2.977 | 0.829 | 0.584 |
| Raw | 8.378 | 47.236 | 87.561 | 98.068 | 9.152 | 6.463 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361345 | 2575 | 7e-23 | 1956 - 2015 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_13785.1 | 2154 | 7e-23 | 559 - 618 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_9366.1 | 2300 | 4e-23 | 1557 - 1616 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC51112 | 474 | 3e-25 | 4 - 63 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49419 | 474 | 3e-25 | 4 - 63 | 100 | 60 / 60 | plus |
Contig Sequence (474 bp)
>U35_49419 474 Hv_44K_v2 TCGAACAGAAGGCTCACACCCAAATCAGATGACTATGCTTTTGGAATCCTTCTCCTTGAG CTCCTCAGCGGCAAGGCACCACTCGAGCACTCGGCCTTAGCGGCAACCAATCTCCAGACA TATGCTCTGCCGGGGAGGGAAGACGAAGGTATCGACAGCGAGCGACTCTAGATGATCGGC GACATTGCGTCTGCTTGGGTCCGGTCGTCGCCAGAGAGTCGACCAACTGCGTGGCAGGTC CTCAAGATGATACAAGAGGTGAAGGAAACAGATACCACCGGAGACAATGAGGACGGGGAT CTTACTAGCGACTCCTAGACCCTATTGTGGATGAAATGGATCGGGTCCACTGGATGCATT ATCCCAAGCGAGCAATCGTAGTTACAATGCAGTGCGCTCTGCCTAGAAAAGCTGATGGAA GGCGTTAGTGGTGTAGGAGAATGGATTTGGGGTCATGATCTCTCTGACTGGACT
Homology of Contig U35_49419 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |