barSeed - Barley Seed Development Database

Probe CUST_33936_PI390587928

Source Contig U35_25463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33936_PI390587928	Hv_44K_v2	TATACTCTGGTGATGAAGGCAGTTCAGCATATGATAAGAGGGAATACTCTCAGTGTGGCA	680	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.349	0.568	1.103	1.090	1.074	1.496
Raw	9.046	21.529	38.967	60.113	20.889	32.863

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359804	2181	2e-24	772 - 831	100	60 / 60	plus	ABC17717
MLOC	MLOC_57405.2	1331	2e-24	668 - 727	100	60 / 60	minus	None
MLOC	MLOC_57405.1	1834	2e-24	694 - 753	100	60 / 60	minus	None
JLOC1	JLOC1_37196.4	1575	8e-25	781 - 840	100	60 / 60	plus
JLOC1	JLOC1_37196.3	1560	8e-25	766 - 825	100	60 / 60	plus
JLOC1	JLOC1_37196.2	1578	8e-25	781 - 840	100	60 / 60	plus
JLOC1	JLOC1_37196.1	1450	8e-25	653 - 712	100	60 / 60	plus
Harvest21	ABC25115	831	3e-25	681 - 740	100	60 / 60	plus
Harvest35	U35_25463	832	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_25463 832 Hv_44K_v2
CAGCTCCTCGCCTGAGGCGACACTCGACTTGTAGGCTGGCCTCGGCCACATCGATCTCTC
GGCCTCTCGAGTAGGAGTACCAGTGGACAGTGGTGGCGGGGCCGAATGGTGGTCTCCGTG
AGCGCAGGCGGTGGCGTGGCGGACGGGTTGCCGACTTTGGGTTCTTCGGCCTCTCCTGCC
CATTCTTGGCCCGCTTGATGATGCCCAGGTTTTTCGTGTTGCTGGTCTGGTCTATGAGCT
GGAAGTGACTGTCCAGTTGTCGGTCAGGGAAATCAAAATGTCAACGAGTGAAAACTTACG
GGTGGAGTTATTGTCCAGGACTCCGCCTTTTGGTTTGAGACTATGGGTTGTGCTTGGCAT
AAGCATTTGGGCTGCCATTCTGTTTGTCCTAGGCCTCATATGCTTCCTGTTGATATACTG
GAGGAGACGAGGGAATCATCATGATATTGCTGAACCTGAGATCCCAGATGTCACCAAAGA
GATTGCAGTAGATGAAGTTGGTAGCCGAGCTTTCGTGGACAACATCTGTGCTCCAGAAAG
TCACATCTTTCCAGTGAAGGAGAGAGATCCAGAGAAAGAATCGCAGAGAATGTCTGCTCA
CTTGATTACGAGCAAATCAATTGATGATCATAATTTGATTGAGTGCAGCTCAGTGCACCA
ATATGATAGGTCCCAGGGGTTATACTCTGGTGATGAAGGCAGTTCAGCATATGATAAGAG
GGAATACTCTCAGTGTGGCACCATGTCCATGTCTCCTCGGGGGGGTCTCCCAGAGTTCTC
TCACCTGNGTTTGGGTCATTGGTATACTCTCAGAGAGTTGGAGCATTCAACA

Homology of Contig U35_25463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35450.1	510	4e-63	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g42740.3	462	4e-103
Arabidopsis v10	None