barSeed - Barley Seed Development Database

Probe CUST_33935_PI390587928

Source Contig U35_25465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33935_PI390587928	Hv_44K_v2	GAGAGAGGGATGTGCCAGAAATACAAGTCAAGGTTGTTTAAACCATTTTTTCTCTAATAC	915	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.469	5.640	1.539	0.645	0.284	0.439
Raw	342.094	332.855	78.313	56.837	7.753	13.482

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29123.2	926	5e-22	800 - 861	97	60 / 62	plus
JLOC1	JLOC1_29123.1	929	5e-22	803 - 864	97	60 / 62	plus
Harvest21	ABC22572	1003	3e-25	29 - 88	100	60 / 60	minus	ABC22572
Harvest35	U35_25465	1003	3e-25	916 - 975	100	60 / 60	plus

Contig Sequence (1003 bp)

>U35_25465 1003 Hv_44K_v2
ACTGTGGAATGTTCTTGTATTGGCATGGGCGTCTAATAGAGTCTTACAAACGAGTTGGAG
GGCAACAGTACAATGCTGACGCAGGGCGTGGAATAATAGGAGTTGCAGATGTTACTGACC
TCATTGATAACGAAGATGGTAGTACTTGGGTTCTTAACAGCAAGCAAGGGTTTCAGGATT
GTGAAATGTATGTCAAACTGGAGGAGTGGCTCGGGAGAAAAGCAGATCAATACTGGGATA
GAAATTTTGACAAGCTTGAATTGAGAGAAGACTCTGAGCATATCGAGGCTGTTGATGACT
GGGTTCAGTGCAACAGCTGTCGTAAATGGAGAGTGCTGAGCGTGGGCTTTGATAAAGACT
GTCTACCCAGTGAATGGTTTTGCTACATGCCACCTTTCAATGGGAAATGTGAGATTCCAG
AAAAAGAAATGGAAGTTGGTGTGATCGCAGTTGGTGCAAAGAGATCTGGCGACAAGAATG
TAGCCCAGCCGAAGGTTCAAAGACTCAGTCGAGGTGAAGATGTTAAGAATCTGAGGTTAA
TCCCGCCATCAACTGACAAAAAGGAAAAAGGATTTTCCGATGCCAGGAGCTGCAAAGAAG
ATTATTTCGCACAAGCTGATTCGGGTACGCCCCGGCCCACTTTGAAGAGGTTGTCGAGGG
GGTATAACAGCAACTGTAAGAAACAGCGGTGAATGATAATGCATGGAGAAGTCCAGGCGC
CTTTGGTCCACGATGATGGAGTTGCAGCTATCTGTTTATTCCAAAGGACTTGAACGCTTA
CCACTACCTTTTGAAGGTTTTGCAAAATGGATGTAAATATGCATACTTTTTTTAATCTGA
TTGTGGAAAATATGGAACCCTACAATATCTGTTGTGTACTGATCTGTCCCTCGTGAGGGA
TTATATAAGGTACATGAGAGAGGGATGTGCCAGAAATACAAGTCAAGGTTGTTTAAACCA
TTTTTTCTCTAATACATATTTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41710.1	793	4e-93	protein\|CW-type Zinc Finger, putative, expressed
Brachypodium v1_2	Bradi1g35820.1	705	2e-70
Arabidopsis v10	None