- Probe CUST_33932_PI390587928
- Source Contig U35_25469
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33932_PI390587928 | Hv_44K_v2 | AAACCCTGTGGAGCCGAAACCTTGAGAGTACATACATGAGTTAGTTGATGTCGTCGTTTC | 368 | GeneList: lightsteelblue1 MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.407 | 1.841 | 0.527 | 0.761 | 0.942 | 1.054 |
| Raw | 53.942 | 18.486 | 3.728 | 9.821 | 3.080 | 5.317 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70546.1 | 1059 | 2e-24 | 754 - 813 | 100 | 60 / 60 | plus | ABC26619 |
| MLOC | AK366552 | 1178 | 3e-21 | 66 - 125 | 97 | 58 / 60 | minus | ABC26619 |
| JLOC1 | JLOC1_46820.1 | 7095 | 8e-25 | 6610 - 6669 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26619 | 454 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus | ABC26619 |
| Harvest35 | U35_25469 | 455 | 3e-25 | 369 - 428 | 100 | 60 / 60 | plus |
Contig Sequence (455 bp)
>U35_25469 455 Hv_44K_v2 AAAGCTTGGAGGTCAAAATTGACAAAAGCCTCCTAGGCATCAGGGCAATGAAGACTCGGC GGTTTGAAGAGCAGCTCTCTGCGTTGAGGCTCAAGGAGACGAAGTTGCGGCAGGACAATG AAGATCTGTATATCCAGTGCCAGAAGGAGCAGCACCTTGAGTTGGAGGCGCCCCCTGCTC CGGTGACCATGGCGGAGCAGGGCCAGGACGACGCGGTTGAAGTGGAGACGGACCTATTTC TTGGACTGCCCGGCACCGGCCGCCCCTGAGATGGAGTCTCCAGGCTTTGGAGGAAAATGC CCAGAATAAGCTGGCCATGGAGTTGCAAGCAGCAGCAAGCAATCGATGCGGACGGCGTAT ATAGATATAAACCCTGTGGAGCCGAAACCTTGAGAGTACATACATGAGTTAGTTGATGTC GTCGTTTCCCCGGGTCCTTCCTGGCCGTGGTGTGC
Homology of Contig U35_25469 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |