- Probe CUST_33931_PI390587928
- Source Contig U35_37440
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33931_PI390587928 | Hv_44K_v2 | CAGTTCTCTCAGCAACATCTGCATCTGAGCTCCATTTCAGTGCCGGAATTTATCAAAAAA | 93 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.441 | 1.497 | 1.169 | 1.032 | 0.452 | 0.465 |
| Raw | 803.065 | 1292.080 | 898.244 | 1200.709 | 189.981 | 212.630 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_4202.1 | 1379 | 6e-21 | 1309 - 1361 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_37440 | 164 | 3e-25 | 94 - 153 | 100 | 60 / 60 | plus |
Contig Sequence (164 bp)
>U35_37440 164 Hv_44K_v2 ACGAAACAGACCAAACAATGATTGTATGACATCTTTCGTTTGTCATTGGTTCCCCTCGAT GTAATCTAGGATGTCATACAATCATTTTGTTGTCAGTTCTCTCAGCAACATCTGCATCTG AGCTCCATTTCAGTGCCGGAATTTATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_37440 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |