barSeed - Barley Seed Development Database

Probe CUST_33930_PI390587928

Source Contig U35_37441

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33930_PI390587928	Hv_44K_v2	TGGTTAGCGATTGTACCGTCCCAATCACAGGCAATGGATTCTTTTCCGATACATAAAAAA	314	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.555	3.413	1.383	0.661	0.303	0.470
Raw	331.716	662.329	240.877	184.367	29.626	49.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_37441	374	3e-25	315 - 374	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_37441 374 Hv_44K_v2
GGACGACATTACGGCGGATCCCACGGACAGGGTGCGCGCGCTGGCCGCGGGCGCGCCGGC
AGTGCCGGACTGGACCTGGGACGCGAGCTGGATCACGGTCCACGCCGGCCCCAGCGGCGA
CGAGCCAACAATGCCGCCGGAGCAGCCGGAGGCGGGCGCGGAGGCCGTCAGCATGGATTC
GCCCGTGGGCGACGGCGGCTCCTTATTGGTTGCGGGGGCCTGGAACAGCAGCCAGCAGGC
CTCACATGGCAATGGCGACGGCTACGATGGCACGGGCAGCTGTAATGGCGAGCGCAGCGA
TGATGGTAATCACGTGGTTAGCGATTGTACCGTCCCAATCACAGGCAATGGATTCTTTTC
CGATACATAAAAAA

Homology of Contig U35_37441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None