barSeed - Barley Seed Development Database

Probe CUST_33927_PI390587928

Source Contig U35_37444

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33927_PI390587928	Hv_44K_v2	GAATCGTCCTTGAAACCACAGTTGAATATACTTATGAAGTGATGTAGGATCTAACTATCT	96	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24060.1	1243	2e-24	939 - 998	100	60 / 60	plus	ABC04548 ABC43241
MLOC	MLOC_24060.2	1104	2e-24	894 - 953	100	60 / 60	plus	ABC04548 ABC43241
JLOC1	JLOC1_16574.1	1212	8e-25	946 - 1005	100	60 / 60	plus
Harvest35	U35_37444	233	3e-25	97 - 156	100	60 / 60	plus

Contig Sequence (233 bp)

>U35_37444 233 Hv_44K_v2
TGCGTTTATTTTCAGCAGCACGTTCCTGTTACAACCACAGGGCTTTGAATGCGTCTAGCG
ACTAGCGTGCCTCTAGATGGGTCATGCAGAGTGGCAGAATCGTCCTTGAAACCACAGTTG
AATATACTTATGAAGTGATGTAGGATCTAACTATCTAAGGCTTTAATTTGCATATGGGTG
CCGATTTTGTTGTAAAAAAAAAAAAAAATATTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_37444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None