barSeed - Barley Seed Development Database

Probe CUST_33911_PI390587928

Source Contig U35_13497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33911_PI390587928	Hv_44K_v2	CTTTTCTTCTTCTTCTTGTTCTTTCTCGGAATGAAGATCAAAGCTGTACACAATTGATTC	503	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.078	0.154	1.156	2.541	1.651	1.423
Raw	4.310	17.665	121.951	402.280	94.683	89.939

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72660.1	1531	2e-24	809 - 868	100	60 / 60	minus	ABC32428
JLOC1	JLOC1_48337.1	1275	8e-25	552 - 611	100	60 / 60	minus
Harvest21	ABC32428	584	3e-25	504 - 563	100	60 / 60	plus	ABC32428
Harvest35	U35_13497	582	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (582 bp)

>U35_13497 582 Hv_44K_v2
GCGGGCAGGCGCGGATGGCGGACGCGTCGGCGACGGTGAACGCGTTCGACGTGATGGTGG
CCGTGCACGGGTCCGGGCTGACGAACCTGGTGTTCCTGCCGATGAACGCGGTGGTGGTGC
AGGTGGTGCCGCTGGGGCGGATGGAGGGCCTGGCCATGGACGAGTACGGCGTGCCGCCGC
GGGACATGAACATGCGCTACATCCAGTACAACATCACGGCGGAGGAGAGCACGCTGTCGG
AGCTCTATCCCCGCGGCCACCCGGTGTTCCTCGACCCCGGCCCCATCCACAAGCAGAGCT
GGTCGCTCGTAAAGGACATCTACCTCGGCAAGCAGGACGTCCGCCTCGACATGGCCCGCT
TCCGGCCCGTGCTCCGCAAGGCGCTCCACCTCCTCCGCTGACACACACACACACACACAC
ACACACTGACACCACACACGCCGGCGCCGGCGCCGGCCGTGACAACGACGACACATACAT
ACATCATGTTAATCAGATCAAACCTTTTCTTCTTCTTCTTGTTCTTTCTCGGAATGAAGA
TCAAAGCTGTACACAATTGATTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49300.1	466	7e-68	protein\|glycosyltransferase protein, putative, expressed
Brachypodium v1_2	Bradi1g34647.1	477	1e-76
Arabidopsis v10	None