barSeed - Barley Seed Development Database

Probe CUST_33908_PI390587928

Source Contig U35_49429

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33908_PI390587928	Hv_44K_v2	GCCACTTGGTTTAATTCAAATGCACAAATATTATGATGGGAAAGAAGAAGACATGACATG	379	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.156	2.772	1.203	0.773	1.193	0.817
Raw	38.272	31.270	12.582	12.077	6.096	4.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66429.4	1120	2e-24	906 - 965	100	60 / 60	plus	None
JLOC1	JLOC1_43774.1	1944	8e-25	1717 - 1776	100	60 / 60	plus
Harvest21	ABC51138	450	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_49429	450	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_49429 450 Hv_44K_v2
GCCTTCACCACCGGCGCCTCCGCGCTCAAGATGGTCGCCATCTCCACCGACGACGCCGCC
GACGTCCTCCCCGACGTCCTCTCGTCGTAGATCGGCGCCGGCCATCACCCGGCCGGCCAA
GAGACCGATCTATACAAACAATTAGTGAACAAAAAAAAAATGCCAAAGATGGTGGTGGTG
GTGAGCTGGTAGCTTAGCTGAGGTAGCTAGGAGGAAGGACGCGCGTGCGGCTGTCGTGTT
TAAGGTTTCCTCCCTCCATATATGTCTCCATGCAGATCGATTCTGGTGCTGGATGCGTCC
AACCAGGCAGCAGGGAACGAGCTAACTGTAAGAAAATCGAGCTTATTAGTTCTACATCTG
CAGCTAGCCAAGCAAGCATGCCACTTGGTTTAATTCAAATGCACAAATATTATGATGGGA
AAGAAGAAGACATGACATGTTGTGTTTGTT

Homology of Contig U35_49429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None