barSeed - Barley Seed Development Database

Probe CUST_33907_PI390587928

Source Contig U35_25470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33907_PI390587928	Hv_44K_v2	ATTCATGGATGCGCTGGAGGAGTGCTACGGCAAGCTCACCGAGCTGGGGCTGCTCATCCA	311	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15558.1	1139	7e-23	365 - 424	98	59 / 60	plus	None
MLOC	MLOC_15558.2	941	3e-22	13 - 71	98	58 / 59	plus	None
JLOC1	JLOC1_10682.1	1296	4e-23	354 - 413	98	59 / 60	plus
Harvest21	ABC26570	469	3e-25	312 - 371	100	60 / 60	plus
Harvest35	U35_25470	470	3e-25	312 - 371	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_25470 470 Hv_44K_v2
GCCGACGACGCGGGCGCGCGCGCCCGTGCCACAGACGCCGTGCGCGAGGCCTGCCAGGCC
ACCGGGTTCTTCCGCGCGGTGAACCACGGCGTGCCGCCGGAGCTCATGGCGCGCGCTCTC
GATCTGTCGGCGGTGTTCTTCGCGCTCCCGGACGAGGAGAAGGCCAAGGTGCGGCCCGCC
GAGGGCGCCTCCCCCGCGCCGCTCCCTGTGGGTTACGCGCGGCAGCCCGCGCACTCCGCC
GACAAGAACGAGTACCTGCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCC
CACCCTGCCGGATTCATGGATGCGCTGGAGGAGTGCTACGGCAAGCTCACCGAGCTGGGG
CTGCTCATCCAGGACATCCTGAGCGAGTGCATGGGCCTGCCGCGAGGCTTCCTCGCCGAT
TACAACGCCGACCGCGGCTTCGACTTCCTCACGGCGCTGCGCTACTTCCC

Homology of Contig U35_25470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55070.1	327	1e-69	protein\|gibberellin 20 oxidase 2, putative, expressed
Brachypodium v1_2	Bradi5g23690.1	327	1e-71
Arabidopsis v10	None