- Probe CUST_33903_PI390587928
- Source Contig U35_25474
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33903_PI390587928 | Hv_44K_v2 | AATTGGCTAAAATCGGTGTTCTGTTTTATCTGCTCCAAGTTGCCTTATCTATGATGTATC | 444 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.559 | 1.534 | 1.035 | 0.886 | 0.424 | 0.480 |
| Raw | 1493.660 | 2315.420 | 1354.070 | 1848.794 | 305.441 | 380.590 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55585.1 | 1108 | 2e-24 | 947 - 1006 | 100 | 60 / 60 | plus | ABC47521 |
| JLOC1 | JLOC1_35870.1 | 1329 | 8e-25 | 1040 - 1099 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47521 | 386 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus | ABC47521 |
| Harvest35 | U35_25474 | 533 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus |
Contig Sequence (533 bp)
>U35_25474 533 Hv_44K_v2 CGCGACTTAGAAGGTTTTATGCAGACACATGCAGATACAACATCACACTTCAGATGATTG GTTTTAATGCTTGGAATAGACATGGAATGCTGGGTGGTCATGTCATGTTGAAGATGCACC TTGGGTTTGTTTTTAATGGTCAATCGATGGATTGTAGGTTGTAGCACCTATGGGTTTTCT GCTCAGGTCAAGCATTGTAAATGCAAAGGGGAGGTGCAAGAATAGGCGATAGCTTTAACT TCTATTTTTGAAATAGGCAAGACACATTTTCATTAATTAAGAAGAGAATTTGCCTGGTTA ATTAGAGGAAAACCAGGCAGAAGCTGAGATAGCTTGAACACTTTCTTAAGGGAGCATTGA TAGAGTTGAGAAGATCAGTGCCATGCAAAAGAGTGTTTAGAGAGGGAGCATAATTATCAT AGGTGATTTGTTTTCGTTGCTCCAAATTGGCTAAAATCGGTGTTCTGTTTTATCTGCTCC AAGTTGCCTTATCTATGATGTATCACCTATTTATTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_25474 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |